Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4943 and GFF4944 are separated by 49 nucleotides GFF4944 and GFF4945 are separated by 24 nucleotides GFF4945 and GFF4946 overlap by 4 nucleotides
GFF4943 - Chloride channel protein, at 35,108 to 36,487
GFF4943
GFF4944 - Excinuclease ABC subunit A, at 36,537 to 39,635
GFF4944
GFF4945 - probable GntR-family transcriptional regulator, at 39,660 to 40,415
GFF4945
GFF4946 - Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 40,412 to 42,181
GFF4946
Position (kb) 36
37
38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.774 kb on + strand, within GFF4943 at 35.774 kb on + strand, within GFF4943 at 35.774 kb on + strand, within GFF4943 at 35.775 kb on - strand, within GFF4943 at 35.775 kb on - strand, within GFF4943 at 35.775 kb on - strand, within GFF4943 at 36.068 kb on + strand, within GFF4943 at 36.069 kb on - strand, within GFF4943 at 36.069 kb on - strand, within GFF4943 at 36.069 kb on - strand, within GFF4943 at 36.069 kb on - strand, within GFF4943 at 36.069 kb on - strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.070 kb on + strand, within GFF4943 at 36.071 kb on - strand, within GFF4943 at 36.071 kb on - strand, within GFF4943 at 36.071 kb on - strand, within GFF4943 at 36.071 kb on - strand, within GFF4943 at 36.374 kb on + strand at 36.375 kb on - strand at 36.375 kb on - strand at 36.375 kb on - strand at 36.375 kb on - strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.392 kb on + strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.393 kb on - strand at 36.502 kb on + strand at 36.502 kb on + strand at 36.502 kb on + strand at 36.502 kb on + strand at 36.502 kb on + strand at 36.502 kb on + strand at 36.503 kb on - strand at 36.503 kb on - strand at 36.503 kb on - strand at 36.559 kb on + strand at 36.624 kb on + strand at 36.624 kb on + strand at 36.625 kb on - strand at 36.625 kb on - strand at 36.625 kb on - strand at 36.780 kb on + strand at 36.780 kb on + strand at 36.780 kb on + strand at 36.780 kb on + strand at 36.780 kb on + strand at 36.780 kb on + strand at 36.781 kb on - strand at 36.781 kb on - strand at 36.781 kb on - strand at 36.781 kb on - strand at 36.781 kb on - strand at 36.801 kb on + strand at 36.963 kb on + strand, within GFF4944 at 36.963 kb on + strand, within GFF4944 at 36.964 kb on - strand, within GFF4944 at 36.964 kb on - strand, within GFF4944 at 36.964 kb on - strand, within GFF4944 at 36.979 kb on - strand, within GFF4944 at 36.999 kb on + strand, within GFF4944 at 37.000 kb on - strand, within GFF4944 at 37.000 kb on - strand, within GFF4944 at 37.164 kb on + strand, within GFF4944 at 37.164 kb on + strand, within GFF4944 at 37.165 kb on - strand, within GFF4944 at 37.165 kb on - strand, within GFF4944 at 37.194 kb on + strand, within GFF4944 at 37.194 kb on + strand, within GFF4944 at 37.194 kb on + strand, within GFF4944 at 37.194 kb on + strand, within GFF4944 at 37.194 kb on + strand, within GFF4944 at 37.194 kb on + strand, within GFF4944 at 37.195 kb on - strand, within GFF4944 at 37.195 kb on - strand, within GFF4944 at 37.195 kb on - strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.200 kb on + strand, within GFF4944 at 37.201 kb on - strand, within GFF4944 at 37.201 kb on - strand, within GFF4944 at 37.201 kb on - strand, within GFF4944 at 37.201 kb on - strand, within GFF4944 at 37.201 kb on - strand, within GFF4944 at 37.423 kb on - strand, within GFF4944 at 37.423 kb on - strand, within GFF4944 at 37.599 kb on + strand, within GFF4944 at 37.600 kb on - strand, within GFF4944 at 37.600 kb on - strand, within GFF4944 at 37.600 kb on - strand, within GFF4944 at 37.600 kb on - strand, within GFF4944 at 37.600 kb on - strand, within GFF4944 at 37.632 kb on + strand, within GFF4944 at 37.632 kb on + strand, within GFF4944 at 37.632 kb on + strand, within GFF4944 at 37.632 kb on + strand, within GFF4944 at 37.633 kb on - strand, within GFF4944 at 37.633 kb on - strand, within GFF4944 at 37.633 kb on - strand, within GFF4944 at 37.633 kb on - strand, within GFF4944 at 37.633 kb on - strand, within GFF4944 at 37.728 kb on + strand, within GFF4944 at 37.728 kb on + strand, within GFF4944 at 37.728 kb on + strand, within GFF4944 at 37.729 kb on - strand, within GFF4944 at 37.729 kb on - strand, within GFF4944 at 37.729 kb on - strand, within GFF4944 at 37.729 kb on - strand, within GFF4944 at 37.729 kb on - strand, within GFF4944 at 38.130 kb on + strand, within GFF4944 at 38.130 kb on + strand, within GFF4944 at 38.130 kb on + strand, within GFF4944 at 38.130 kb on + strand, within GFF4944 at 38.130 kb on + strand, within GFF4944 at 38.131 kb on - strand, within GFF4944 at 38.131 kb on - strand, within GFF4944 at 38.131 kb on - strand, within GFF4944 at 38.131 kb on - strand, within GFF4944 at 38.131 kb on - strand, within GFF4944 at 38.131 kb on - strand, within GFF4944 at 38.229 kb on + strand, within GFF4944 at 38.229 kb on + strand, within GFF4944 at 38.229 kb on + strand, within GFF4944 at 38.229 kb on + strand, within GFF4944 at 38.229 kb on + strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.230 kb on - strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.430 kb on + strand, within GFF4944 at 38.431 kb on - strand, within GFF4944 at 38.431 kb on - strand, within GFF4944 at 38.431 kb on - strand, within GFF4944 at 38.431 kb on - strand, within GFF4944 at 38.431 kb on - strand, within GFF4944 at 38.472 kb on + strand, within GFF4944 at 38.473 kb on - strand, within GFF4944 at 38.473 kb on - strand, within GFF4944 at 38.778 kb on + strand, within GFF4944 at 38.778 kb on + strand, within GFF4944 at 38.779 kb on - strand, within GFF4944 at 38.779 kb on - strand, within GFF4944 at 38.802 kb on + strand, within GFF4944 at 38.853 kb on + strand, within GFF4944 at 38.854 kb on - strand, within GFF4944 at 38.854 kb on - strand, within GFF4944 at 38.922 kb on + strand, within GFF4944 at 38.922 kb on + strand, within GFF4944 at 38.922 kb on + strand, within GFF4944 at 38.922 kb on + strand, within GFF4944 at 38.922 kb on + strand, within GFF4944 at 38.922 kb on + strand, within GFF4944 at 38.923 kb on - strand, within GFF4944 at 38.923 kb on - strand, within GFF4944 at 38.923 kb on - strand, within GFF4944 at 38.988 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.090 kb on + strand, within GFF4944 at 39.091 kb on - strand, within GFF4944 at 39.091 kb on - strand, within GFF4944 at 39.091 kb on - strand, within GFF4944 at 39.091 kb on - strand, within GFF4944 at 39.091 kb on - strand, within GFF4944 at 39.091 kb on - strand, within GFF4944 at 39.123 kb on + strand, within GFF4944 at 39.123 kb on + strand, within GFF4944 at 39.124 kb on - strand, within GFF4944 at 39.124 kb on - strand, within GFF4944 at 39.150 kb on + strand, within GFF4944 at 39.150 kb on + strand, within GFF4944 at 39.150 kb on + strand, within GFF4944 at 39.150 kb on + strand, within GFF4944 at 39.150 kb on + strand, within GFF4944 at 39.151 kb on - strand, within GFF4944 at 39.151 kb on - strand, within GFF4944 at 39.151 kb on - strand, within GFF4944 at 39.270 kb on + strand, within GFF4944 at 39.270 kb on + strand, within GFF4944 at 39.270 kb on + strand, within GFF4944 at 39.270 kb on + strand, within GFF4944 at 39.270 kb on + strand, within GFF4944 at 39.271 kb on - strand, within GFF4944 at 39.271 kb on - strand, within GFF4944 at 39.271 kb on - strand, within GFF4944 at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.372 kb on + strand at 39.373 kb on - strand at 39.373 kb on - strand at 39.373 kb on - strand at 39.373 kb on - strand at 39.616 kb on - strand at 39.746 kb on - strand, within GFF4945 at 39.746 kb on - strand, within GFF4945 at 39.865 kb on + strand, within GFF4945 at 39.887 kb on - strand, within GFF4945 at 39.887 kb on - strand, within GFF4945 at 39.887 kb on - strand, within GFF4945 at 40.198 kb on + strand, within GFF4945 at 40.198 kb on + strand, within GFF4945 at 40.198 kb on + strand, within GFF4945 at 40.199 kb on - strand, within GFF4945 at 40.199 kb on - strand, within GFF4945
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 35,774 + GFF4943 0.48 +0.1 35,774 + GFF4943 0.48 +0.1 35,774 + GFF4943 0.48 +1.6 35,775 - GFF4943 0.48 -0.2 35,775 - GFF4943 0.48 -0.1 35,775 - GFF4943 0.48 -1.2 36,068 + GFF4943 0.70 -0.7 36,069 - GFF4943 0.70 +0.4 36,069 - GFF4943 0.70 -0.8 36,069 - GFF4943 0.70 -0.5 36,069 - GFF4943 0.70 -0.5 36,069 - GFF4943 0.70 -0.5 36,070 + GFF4943 0.70 +0.6 36,070 + GFF4943 0.70 -0.4 36,070 + GFF4943 0.70 -0.5 36,070 + GFF4943 0.70 +0.1 36,070 + GFF4943 0.70 +0.3 36,070 + GFF4943 0.70 +0.2 36,070 + GFF4943 0.70 -0.0 36,070 + GFF4943 0.70 -0.2 36,071 - GFF4943 0.70 +1.1 36,071 - GFF4943 0.70 +0.2 36,071 - GFF4943 0.70 -0.4 36,071 - GFF4943 0.70 +0.6 36,374 + -0.8 36,375 - -1.2 36,375 - +0.2 36,375 - -0.8 36,375 - +0.1 36,392 + +0.8 36,392 + -0.8 36,392 + +0.5 36,392 + -1.0 36,392 + +1.1 36,392 + -0.3 36,392 + -0.4 36,392 + +0.0 36,392 + -0.7 36,393 - -0.4 36,393 - -0.4 36,393 - -0.3 36,393 - -0.3 36,393 - -0.8 36,393 - +0.5 36,393 - -0.1 36,393 - -0.3 36,393 - +0.4 36,502 + -0.3 36,502 + +0.4 36,502 + -0.1 36,502 + -0.7 36,502 + +0.0 36,502 + +0.6 36,503 - -1.4 36,503 - +0.1 36,503 - +0.6 36,559 + -0.7 36,624 + -0.4 36,624 + -2.5 36,625 - -1.5 36,625 - +0.4 36,625 - -1.7 36,780 + +2.2 36,780 + +0.4 36,780 + +2.0 36,780 + +1.2 36,780 + +0.3 36,780 + +1.0 36,781 - +0.1 36,781 - +0.8 36,781 - +0.4 36,781 - -0.1 36,781 - -0.6 36,801 + -0.0 36,963 + GFF4944 0.14 -0.6 36,963 + GFF4944 0.14 +0.3 36,964 - GFF4944 0.14 +0.6 36,964 - GFF4944 0.14 -0.8 36,964 - GFF4944 0.14 -0.2 36,979 - GFF4944 0.14 -0.4 36,999 + GFF4944 0.15 -0.5 37,000 - GFF4944 0.15 -2.1 37,000 - GFF4944 0.15 +0.4 37,164 + GFF4944 0.20 +0.0 37,164 + GFF4944 0.20 -0.1 37,165 - GFF4944 0.20 -0.6 37,165 - GFF4944 0.20 -0.4 37,194 + GFF4944 0.21 -0.4 37,194 + GFF4944 0.21 +0.0 37,194 + GFF4944 0.21 -0.6 37,194 + GFF4944 0.21 -0.0 37,194 + GFF4944 0.21 -0.6 37,194 + GFF4944 0.21 +0.6 37,195 - GFF4944 0.21 +1.3 37,195 - GFF4944 0.21 -0.5 37,195 - GFF4944 0.21 -0.5 37,200 + GFF4944 0.21 -0.2 37,200 + GFF4944 0.21 +0.1 37,200 + GFF4944 0.21 +0.4 37,200 + GFF4944 0.21 -1.6 37,200 + GFF4944 0.21 +1.0 37,200 + GFF4944 0.21 -0.5 37,200 + GFF4944 0.21 -1.0 37,200 + GFF4944 0.21 +0.6 37,201 - GFF4944 0.21 +1.3 37,201 - GFF4944 0.21 -0.3 37,201 - GFF4944 0.21 -0.0 37,201 - GFF4944 0.21 +0.4 37,201 - GFF4944 0.21 +0.4 37,423 - GFF4944 0.29 +0.3 37,423 - GFF4944 0.29 -0.8 37,599 + GFF4944 0.34 +0.2 37,600 - GFF4944 0.34 -0.8 37,600 - GFF4944 0.34 -1.4 37,600 - GFF4944 0.34 -1.4 37,600 - GFF4944 0.34 +1.0 37,600 - GFF4944 0.34 -0.5 37,632 + GFF4944 0.35 -0.0 37,632 + GFF4944 0.35 +0.0 37,632 + GFF4944 0.35 +0.0 37,632 + GFF4944 0.35 +0.4 37,633 - GFF4944 0.35 +0.1 37,633 - GFF4944 0.35 -0.8 37,633 - GFF4944 0.35 +0.1 37,633 - GFF4944 0.35 -0.8 37,633 - GFF4944 0.35 -0.2 37,728 + GFF4944 0.38 +0.2 37,728 + GFF4944 0.38 +1.6 37,728 + GFF4944 0.38 -0.2 37,729 - GFF4944 0.38 -0.4 37,729 - GFF4944 0.38 +0.2 37,729 - GFF4944 0.38 +0.2 37,729 - GFF4944 0.38 +0.4 37,729 - GFF4944 0.38 -0.5 38,130 + GFF4944 0.51 -0.7 38,130 + GFF4944 0.51 -0.7 38,130 + GFF4944 0.51 -0.4 38,130 + GFF4944 0.51 -0.1 38,130 + GFF4944 0.51 -1.5 38,131 - GFF4944 0.51 -0.1 38,131 - GFF4944 0.51 -1.2 38,131 - GFF4944 0.51 -0.6 38,131 - GFF4944 0.51 +0.0 38,131 - GFF4944 0.51 -0.6 38,131 - GFF4944 0.51 -1.0 38,229 + GFF4944 0.55 -0.1 38,229 + GFF4944 0.55 +0.3 38,229 + GFF4944 0.55 -1.2 38,229 + GFF4944 0.55 +0.2 38,229 + GFF4944 0.55 +0.6 38,230 - GFF4944 0.55 -0.0 38,230 - GFF4944 0.55 +0.4 38,230 - GFF4944 0.55 +0.1 38,230 - GFF4944 0.55 -0.1 38,230 - GFF4944 0.55 -0.7 38,230 - GFF4944 0.55 -0.6 38,230 - GFF4944 0.55 +0.3 38,230 - GFF4944 0.55 -1.1 38,230 - GFF4944 0.55 -1.5 38,230 - GFF4944 0.55 -2.4 38,230 - GFF4944 0.55 +2.6 38,230 - GFF4944 0.55 +1.0 38,230 - GFF4944 0.55 -0.1 38,230 - GFF4944 0.55 +0.0 38,430 + GFF4944 0.61 +0.2 38,430 + GFF4944 0.61 -0.0 38,430 + GFF4944 0.61 -0.3 38,430 + GFF4944 0.61 -0.2 38,430 + GFF4944 0.61 +1.0 38,430 + GFF4944 0.61 +0.1 38,430 + GFF4944 0.61 +0.3 38,430 + GFF4944 0.61 +0.6 38,430 + GFF4944 0.61 -2.1 38,431 - GFF4944 0.61 -0.0 38,431 - GFF4944 0.61 -0.4 38,431 - GFF4944 0.61 -0.0 38,431 - GFF4944 0.61 -1.0 38,431 - GFF4944 0.61 +0.4 38,472 + GFF4944 0.62 -0.3 38,473 - GFF4944 0.62 -1.9 38,473 - GFF4944 0.62 +0.0 38,778 + GFF4944 0.72 -0.3 38,778 + GFF4944 0.72 +0.4 38,779 - GFF4944 0.72 -1.6 38,779 - GFF4944 0.72 +0.2 38,802 + GFF4944 0.73 -0.7 38,853 + GFF4944 0.75 +0.4 38,854 - GFF4944 0.75 -2.9 38,854 - GFF4944 0.75 -0.3 38,922 + GFF4944 0.77 -0.8 38,922 + GFF4944 0.77 +0.1 38,922 + GFF4944 0.77 -0.2 38,922 + GFF4944 0.77 -0.0 38,922 + GFF4944 0.77 +0.6 38,922 + GFF4944 0.77 -0.9 38,923 - GFF4944 0.77 +0.2 38,923 - GFF4944 0.77 -0.3 38,923 - GFF4944 0.77 -0.7 38,988 + GFF4944 0.79 +0.5 39,090 + GFF4944 0.82 +0.3 39,090 + GFF4944 0.82 -0.3 39,090 + GFF4944 0.82 -0.8 39,090 + GFF4944 0.82 -1.8 39,090 + GFF4944 0.82 +0.1 39,090 + GFF4944 0.82 -0.1 39,090 + GFF4944 0.82 -0.3 39,090 + GFF4944 0.82 -0.2 39,090 + GFF4944 0.82 -1.2 39,091 - GFF4944 0.82 -0.3 39,091 - GFF4944 0.82 -0.5 39,091 - GFF4944 0.82 -1.3 39,091 - GFF4944 0.82 -0.4 39,091 - GFF4944 0.82 +0.7 39,091 - GFF4944 0.82 +0.4 39,123 + GFF4944 0.83 +1.0 39,123 + GFF4944 0.83 +0.0 39,124 - GFF4944 0.83 +0.0 39,124 - GFF4944 0.83 -1.2 39,150 + GFF4944 0.84 -0.1 39,150 + GFF4944 0.84 -0.7 39,150 + GFF4944 0.84 +1.0 39,150 + GFF4944 0.84 +1.2 39,150 + GFF4944 0.84 +0.0 39,151 - GFF4944 0.84 -0.8 39,151 - GFF4944 0.84 -0.5 39,151 - GFF4944 0.84 +1.0 39,270 + GFF4944 0.88 -0.7 39,270 + GFF4944 0.88 +0.5 39,270 + GFF4944 0.88 -0.3 39,270 + GFF4944 0.88 -0.5 39,270 + GFF4944 0.88 +0.2 39,271 - GFF4944 0.88 -0.0 39,271 - GFF4944 0.88 -1.0 39,271 - GFF4944 0.88 -0.3 39,372 + -0.3 39,372 + +0.2 39,372 + +0.6 39,372 + -0.1 39,372 + -0.1 39,372 + +2.0 39,372 + -0.4 39,372 + +0.6 39,372 + -0.2 39,373 - -1.1 39,373 - +0.7 39,373 - +0.7 39,373 - +0.2 39,616 - -0.8 39,746 - GFF4945 0.11 +0.2 39,746 - GFF4945 0.11 +1.3 39,865 + GFF4945 0.27 +0.6 39,887 - GFF4945 0.30 -0.2 39,887 - GFF4945 0.30 +0.2 39,887 - GFF4945 0.30 +0.6 40,198 + GFF4945 0.71 +0.1 40,198 + GFF4945 0.71 -0.8 40,198 + GFF4945 0.71 +0.6 40,199 - GFF4945 0.71 -0.3 40,199 - GFF4945 0.71 -0.0
Or see this region's nucleotide sequence