Strain Fitness in Variovorax sp. SCN45 around GFF4828

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4826 and GFF4827 are separated by 71 nucleotidesGFF4827 and GFF4828 are separated by 7 nucleotidesGFF4828 and GFF4829 are separated by 73 nucleotides GFF4826 - Permease of the drug/metabolite transporter (DMT) superfamily, at 197,123 to 198,013 GFF4826 GFF4827 - FIG00348957: hypothetical protein, at 198,085 to 198,501 GFF4827 GFF4828 - no description, at 198,509 to 198,634 GFF4828 GFF4829 - Isocitrate lyase (EC 4.1.3.1), at 198,708 to 200,039 GFF4829 Position (kb) 198 199Strain fitness (log2 ratio) -2 -1 0 1 2 3at 197.509 kb on - strand, within GFF4826at 197.509 kb on - strand, within GFF4826at 197.833 kb on + strand, within GFF4826at 197.833 kb on + strand, within GFF4826at 197.967 kb on + strandat 197.968 kb on - strandat 198.006 kb on + strandat 198.007 kb on - strandat 198.007 kb on - strandat 198.007 kb on - strandat 198.007 kb on - strandat 198.047 kb on + strandat 198.047 kb on + strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.048 kb on - strandat 198.063 kb on + strandat 198.063 kb on + strandat 198.064 kb on - strandat 198.064 kb on - strandat 198.107 kb on - strandat 198.199 kb on + strand, within GFF4827at 198.214 kb on + strand, within GFF4827at 198.214 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.262 kb on + strand, within GFF4827at 198.263 kb on - strand, within GFF4827at 198.263 kb on - strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.334 kb on + strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.335 kb on - strand, within GFF4827at 198.392 kb on - strand, within GFF4827at 198.507 kb on + strandat 198.508 kb on - strandat 198.551 kb on + strand, within GFF4828at 198.588 kb on + strand, within GFF4828at 198.589 kb on - strand, within GFF4828at 198.625 kb on + strandat 198.635 kb on - strandat 198.653 kb on + strandat 198.653 kb on + strandat 198.654 kb on - strandat 198.658 kb on + strandat 198.658 kb on + strandat 198.658 kb on + strandat 198.658 kb on + strandat 198.924 kb on + strand, within GFF4829at 198.924 kb on + strand, within GFF4829at 198.924 kb on + strand, within GFF4829at 198.925 kb on - strand, within GFF4829at 198.925 kb on - strand, within GFF4829at 198.925 kb on - strand, within GFF4829at 198.996 kb on + strand, within GFF4829at 198.996 kb on + strand, within GFF4829at 198.996 kb on + strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 198.997 kb on - strand, within GFF4829at 199.047 kb on + strand, within GFF4829at 199.048 kb on - strand, within GFF4829at 199.065 kb on + strand, within GFF4829at 199.065 kb on + strand, within GFF4829at 199.066 kb on - strand, within GFF4829at 199.066 kb on - strand, within GFF4829at 199.066 kb on - strand, within GFF4829at 199.071 kb on + strand, within GFF4829at 199.071 kb on + strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.072 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.180 kb on - strand, within GFF4829at 199.518 kb on + strand, within GFF4829at 199.519 kb on - strand, within GFF4829at 199.519 kb on - strand, within GFF4829at 199.566 kb on + strand, within GFF4829at 199.567 kb on - strand, within GFF4829

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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197,509 - GFF4826 0.43 +0.0
197,509 - GFF4826 0.43 -0.3
197,833 + GFF4826 0.80 +0.8
197,833 + GFF4826 0.80 +0.3
197,967 + -1.0
197,968 - +0.9
198,006 + +0.1
198,007 - -0.7
198,007 - -0.3
198,007 - -0.1
198,007 - -1.3
198,047 + -0.2
198,047 + -1.8
198,048 - -0.1
198,048 - -0.4
198,048 - -0.7
198,048 - -0.2
198,048 - +0.3
198,048 - -0.2
198,048 - +2.8
198,063 + -0.5
198,063 + +0.6
198,064 - +0.4
198,064 - -0.9
198,107 - +0.2
198,199 + GFF4827 0.27 -0.1
198,214 + GFF4827 0.31 +0.4
198,214 + GFF4827 0.31 -0.4
198,262 + GFF4827 0.42 +1.5
198,262 + GFF4827 0.42 -0.9
198,262 + GFF4827 0.42 -0.3
198,262 + GFF4827 0.42 -1.3
198,262 + GFF4827 0.42 +0.1
198,262 + GFF4827 0.42 -0.1
198,262 + GFF4827 0.42 -1.1
198,263 - GFF4827 0.43 +0.8
198,263 - GFF4827 0.43 -1.9
198,334 + GFF4827 0.60 -0.5
198,334 + GFF4827 0.60 +0.2
198,334 + GFF4827 0.60 -0.2
198,334 + GFF4827 0.60 -1.8
198,334 + GFF4827 0.60 -0.4
198,334 + GFF4827 0.60 -0.7
198,335 - GFF4827 0.60 +0.8
198,335 - GFF4827 0.60 -1.0
198,335 - GFF4827 0.60 -1.0
198,335 - GFF4827 0.60 +0.2
198,335 - GFF4827 0.60 -0.1
198,335 - GFF4827 0.60 -0.9
198,335 - GFF4827 0.60 -1.7
198,392 - GFF4827 0.74 -0.3
198,507 + +0.1
198,508 - +0.3
198,551 + GFF4828 0.33 -1.0
198,588 + GFF4828 0.63 +0.4
198,589 - GFF4828 0.63 -1.2
198,625 + -2.0
198,635 - -0.7
198,653 + -0.5
198,653 + -1.1
198,654 - +0.3
198,658 + -0.2
198,658 + +0.0
198,658 + +1.7
198,658 + -0.3
198,924 + GFF4829 0.16 +0.4
198,924 + GFF4829 0.16 +0.5
198,924 + GFF4829 0.16 -0.2
198,925 - GFF4829 0.16 -1.5
198,925 - GFF4829 0.16 -0.1
198,925 - GFF4829 0.16 -0.1
198,996 + GFF4829 0.22 +1.5
198,996 + GFF4829 0.22 -2.5
198,996 + GFF4829 0.22 -0.8
198,997 - GFF4829 0.22 -0.7
198,997 - GFF4829 0.22 +0.7
198,997 - GFF4829 0.22 -0.7
198,997 - GFF4829 0.22 -0.4
198,997 - GFF4829 0.22 -0.8
198,997 - GFF4829 0.22 -1.2
199,047 + GFF4829 0.25 -0.4
199,048 - GFF4829 0.26 -0.6
199,065 + GFF4829 0.27 -0.8
199,065 + GFF4829 0.27 +0.0
199,066 - GFF4829 0.27 +0.1
199,066 - GFF4829 0.27 +0.9
199,066 - GFF4829 0.27 -0.1
199,071 + GFF4829 0.27 -0.2
199,071 + GFF4829 0.27 -1.5
199,072 - GFF4829 0.27 -0.6
199,072 - GFF4829 0.27 -1.1
199,072 - GFF4829 0.27 -0.3
199,072 - GFF4829 0.27 +0.6
199,180 - GFF4829 0.35 -0.6
199,180 - GFF4829 0.35 -1.4
199,180 - GFF4829 0.35 -2.6
199,180 - GFF4829 0.35 +2.1
199,518 + GFF4829 0.61 +0.2
199,519 - GFF4829 0.61 +0.2
199,519 - GFF4829 0.61 -0.2
199,566 + GFF4829 0.64 +0.7
199,567 - GFF4829 0.64 -0.1

Or see this region's nucleotide sequence