Strain Fitness in Variovorax sp. SCN45 around GFF4765

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4763 and GFF4764 are separated by 15 nucleotidesGFF4764 and GFF4765 are separated by 7 nucleotidesGFF4765 and GFF4766 are separated by 7 nucleotidesGFF4766 and GFF4767 are separated by 24 nucleotides GFF4763 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 130,397 to 131,884 GFF4763 GFF4764 - Putative transmembrane protein, at 131,900 to 132,205 GFF4764 GFF4765 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 132,213 to 132,830 GFF4765 GFF4766 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 132,838 to 133,302 GFF4766 GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087 GFF4767 Position (kb) 132 133Strain fitness (log2 ratio) -2 -1 0 1at 131.852 kb on + strandat 132.126 kb on - strand, within GFF4764at 132.341 kb on + strand, within GFF4765at 132.341 kb on + strand, within GFF4765at 132.341 kb on + strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.342 kb on - strand, within GFF4765at 132.357 kb on + strand, within GFF4765at 132.358 kb on - strand, within GFF4765at 132.358 kb on - strand, within GFF4765at 132.538 kb on - strand, within GFF4765at 132.538 kb on - strand, within GFF4765at 132.588 kb on + strand, within GFF4765at 132.589 kb on - strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.608 kb on + strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.609 kb on - strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.612 kb on + strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 132.613 kb on - strand, within GFF4765at 133.174 kb on + strand, within GFF4766at 133.300 kb on + strandat 133.300 kb on + strandat 133.300 kb on + strandat 133.301 kb on - strandat 133.301 kb on - strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.303 kb on + strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.304 kb on - strandat 133.361 kb on + strandat 133.361 kb on + strandat 133.362 kb on - strandat 133.362 kb on - strandat 133.667 kb on + strand, within GFF4767at 133.668 kb on - strand, within GFF4767at 133.668 kb on - strand, within GFF4767

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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131,852 + +0.3
132,126 - GFF4764 0.74 +1.5
132,341 + GFF4765 0.21 -0.3
132,341 + GFF4765 0.21 +1.3
132,341 + GFF4765 0.21 -0.0
132,342 - GFF4765 0.21 -1.5
132,342 - GFF4765 0.21 -0.5
132,342 - GFF4765 0.21 -0.8
132,342 - GFF4765 0.21 -1.0
132,342 - GFF4765 0.21 +0.6
132,342 - GFF4765 0.21 -1.7
132,357 + GFF4765 0.23 +0.0
132,358 - GFF4765 0.23 +0.1
132,358 - GFF4765 0.23 +0.2
132,538 - GFF4765 0.53 +1.0
132,538 - GFF4765 0.53 -0.2
132,588 + GFF4765 0.61 -0.8
132,589 - GFF4765 0.61 -0.7
132,608 + GFF4765 0.64 -0.9
132,608 + GFF4765 0.64 +0.3
132,608 + GFF4765 0.64 -0.4
132,608 + GFF4765 0.64 -0.8
132,608 + GFF4765 0.64 -0.3
132,608 + GFF4765 0.64 -0.1
132,608 + GFF4765 0.64 -0.9
132,608 + GFF4765 0.64 -0.1
132,608 + GFF4765 0.64 -0.1
132,608 + GFF4765 0.64 -0.5
132,608 + GFF4765 0.64 +0.9
132,609 - GFF4765 0.64 -0.3
132,609 - GFF4765 0.64 +0.5
132,609 - GFF4765 0.64 +0.0
132,609 - GFF4765 0.64 -2.2
132,609 - GFF4765 0.64 +0.1
132,609 - GFF4765 0.64 +0.3
132,609 - GFF4765 0.64 -0.2
132,609 - GFF4765 0.64 +1.1
132,609 - GFF4765 0.64 +0.8
132,609 - GFF4765 0.64 +0.6
132,609 - GFF4765 0.64 -0.5
132,612 + GFF4765 0.65 +0.3
132,612 + GFF4765 0.65 +0.7
132,612 + GFF4765 0.65 +0.6
132,613 - GFF4765 0.65 +0.6
132,613 - GFF4765 0.65 +0.7
132,613 - GFF4765 0.65 +0.9
132,613 - GFF4765 0.65 -0.4
132,613 - GFF4765 0.65 +0.8
133,174 + GFF4766 0.72 -1.0
133,300 + -0.5
133,300 + +0.0
133,300 + -0.0
133,301 - -0.4
133,301 - +0.4
133,303 + +0.8
133,303 + +0.4
133,303 + +0.7
133,303 + -0.3
133,303 + -0.5
133,304 - +0.5
133,304 - -0.7
133,304 - -0.5
133,304 - -1.0
133,304 - +0.8
133,304 - +0.5
133,361 + +0.1
133,361 + -0.7
133,362 - -1.1
133,362 - -0.1
133,667 + GFF4767 0.19 -0.5
133,668 - GFF4767 0.19 -1.5
133,668 - GFF4767 0.19 +0.9

Or see this region's nucleotide sequence