Strain Fitness in Variovorax sp. SCN45 around GFF4688

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
47,073	+		GFF4686	0.57	+0.5
47,073	+		GFF4686	0.57	+0.8
47,074	-		GFF4686	0.57	-0.5
47,074	-		GFF4686	0.57	-0.4
47,074	-		GFF4686	0.57	-0.8
47,074	-		GFF4686	0.57	-1.3
47,074	-		GFF4686	0.57	-0.3
47,074	-		GFF4686	0.57	-1.5
47,165	+		GFF4686	0.71	-0.2
47,166	-		GFF4686	0.71	+0.2
47,166	-		GFF4686	0.71	-0.5
47,166	-		GFF4686	0.71	+0.9
47,229	+		GFF4686	0.80	-1.7
47,229	+		GFF4686	0.80	+0.2
47,230	-		GFF4686	0.80	-2.4
47,230	-		GFF4686	0.80	-0.7
47,230	-		GFF4686	0.80	+1.8
47,250	+		GFF4686	0.83	+0.5
47,251	-		GFF4686	0.83	+0.1
47,277	-		GFF4686	0.87	-0.8
47,277	-		GFF4686	0.87	-0.1
47,277	-		GFF4686	0.87	+1.2
47,277	-		GFF4686	0.87	-0.2
47,278	+		GFF4686	0.87	-0.0
47,278	+		GFF4686	0.87	-0.6
47,279	-		GFF4686	0.88	-0.7
47,289	+		GFF4686	0.89	+0.7
47,289	+		GFF4686	0.89	+0.3
47,290	-		GFF4686	0.89	-1.1
47,290	-		GFF4686	0.89	-0.6
47,290	-		GFF4686	0.89	+0.2
47,290	-		GFF4686	0.89	+0.9
47,290	-		GFF4686	0.89	-0.8
47,290	-		GFF4686	0.89	-1.8
47,290	-		GFF4686	0.89	-1.7
47,290	-		GFF4686	0.89	-0.3
47,320	-				+0.2
47,345	+				-0.2
47,373	+				-0.3
47,373	+				-0.4
47,399	+				-0.6
47,406	+				+0.9
47,406	+				-0.0
47,406	+				+0.8
47,406	+				-1.7
47,406	+				-0.2
47,407	-				-0.6
47,407	-				-0.6
47,409	+				-0.7
47,409	+				-1.1
47,410	-				+0.3
47,415	+				+0.2
47,415	+				-1.0
47,416	-				-0.3
47,416	-				-0.8
47,416	-				-1.7
47,446	+				+0.0
47,446	+				-0.4
47,446	+				-0.9
47,446	+				+0.6
47,446	+				+0.1
47,446	+				-0.4
47,446	+				+0.2
47,446	+				+0.0
47,447	-				+1.5
47,447	-				+0.3
47,447	-				-0.6
47,447	-				+0.2
47,447	-				-0.8
47,447	-				-0.3
47,447	-				-0.4
47,447	-				-0.0
47,447	-				+2.5
47,447	-				+0.7
47,447	-				-0.5
47,447	-				+0.6
47,507	+				-0.7
47,507	+				-0.4
47,507	+				-0.6
47,508	-				+0.8
47,508	-				-1.1
47,509	+				+0.5
47,509	+				-0.5
47,510	-				-0.4
47,510	-				+0.2
47,545	+				+0.4
47,545	+				-0.8
47,545	+				-0.0
47,545	+				-0.3
47,545	+				-0.2
47,546	-				-0.3
47,546	-				+0.5
47,546	-				-0.2
47,546	-				-0.0
47,594	+		GFF4687	0.19	-0.5
47,594	+		GFF4687	0.19	-0.5
47,594	+		GFF4687	0.19	+0.5
47,594	+		GFF4687	0.19	-1.2
47,594	+		GFF4687	0.19	-0.8
47,594	+		GFF4687	0.19	+1.1
47,595	-		GFF4687	0.19	-0.7
47,595	-		GFF4687	0.19	-0.5
47,595	-		GFF4687	0.19	-2.2
47,595	-		GFF4687	0.19	-0.4
47,754	-		GFF4687	0.62	-0.1
48,046	+				-0.1
48,046	+				-0.3
48,046	+				-0.0
48,046	+				-0.7
48,047	-				-0.7
48,047	-				+0.1
48,047	-				-0.8
48,047	-				+0.0
48,047	-				-0.4
49,150	+		GFF4688	0.85	-0.3
49,150	+		GFF4688	0.85	-0.4
49,151	-		GFF4688	0.85	-1.1
49,151	-		GFF4688	0.85	-1.3
49,151	-		GFF4688	0.85	+1.5
49,361	+				+0.2
49,780	-		GFF4689	0.29	-0.4
49,843	+		GFF4689	0.34	+1.0
50,032	+		GFF4689	0.47	-0.9
50,032	+		GFF4689	0.47	-0.2
50,032	+		GFF4689	0.47	-0.1
50,032	+		GFF4689	0.47	-1.2
50,032	+		GFF4689	0.47	-2.4
50,032	+		GFF4689	0.47	-1.0
50,032	+		GFF4689	0.47	-0.6
50,032	+		GFF4689	0.47	-0.2
50,032	+		GFF4689	0.47	+0.5
50,033	-		GFF4689	0.47	-0.4
50,033	-		GFF4689	0.47	-0.1
50,033	-		GFF4689	0.47	+0.6
50,033	-		GFF4689	0.47	+0.9
50,033	-		GFF4689	0.47	-0.7
50,033	-		GFF4689	0.47	-0.4
50,033	-		GFF4689	0.47	-0.3
50,033	-		GFF4689	0.47	-0.3
50,033	-		GFF4689	0.47	-0.3
50,033	-		GFF4689	0.47	-0.2
50,033	-		GFF4689	0.47	-0.2
50,036	+		GFF4689	0.48	+1.5
50,036	+		GFF4689	0.48	-0.3
50,037	-		GFF4689	0.48	-0.3
50,083	+		GFF4689	0.51	-1.1
50,083	+		GFF4689	0.51	-1.1
50,083	+		GFF4689	0.51	-0.5
50,083	+		GFF4689	0.51	-0.1
50,083	+		GFF4689	0.51	-0.0
50,083	+		GFF4689	0.51	+1.5
50,084	-		GFF4689	0.51	+0.1