Strain Fitness in Variovorax sp. SCN45 around GFF4657

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
15,161	+		GFF4656	0.68	-0.3
15,161	+		GFF4656	0.68	+2.1
15,161	+		GFF4656	0.68	+0.1
15,245	+		GFF4656	0.72	+0.5
15,245	+		GFF4656	0.72	-0.8
15,245	+		GFF4656	0.72	-0.4
15,245	+		GFF4656	0.72	-0.5
15,245	+		GFF4656	0.72	+1.9
15,245	+		GFF4656	0.72	+0.1
15,246	-		GFF4656	0.72	+0.3
15,246	-		GFF4656	0.72	-1.1
15,246	-		GFF4656	0.72	-0.3
15,458	+		GFF4656	0.80	+0.2
15,459	-		GFF4656	0.80	-0.0
15,942	+				-0.7
15,942	+				-0.7
15,943	-				-0.9
15,943	-				-1.3
16,010	+				-0.5
16,010	+				+0.8
16,011	-				+1.1
16,011	-				+0.0
16,011	-				-0.5
16,011	-				-0.6
16,011	-				-0.7
16,011	-				-0.7
16,011	-				-0.4
16,011	-				-0.9
16,053	+				-1.0
16,053	+				-1.0
16,067	+				-0.4
16,067	+				+0.5
16,067	+				-0.1
16,067	+				+0.2
16,067	+				-0.3
16,067	+				-0.4
16,067	+				-0.4
16,067	+				-1.4
16,068	-				-0.0
16,068	-				+0.1
16,068	-				+0.2
16,068	-				+0.4
16,068	-				-0.1
16,068	-				-0.9
16,068	-				-1.0
16,155	-		GFF4657	0.11	+0.9
16,155	-		GFF4657	0.11	+0.3
16,155	-		GFF4657	0.11	+0.1
16,214	+		GFF4657	0.17	+0.4
16,215	-		GFF4657	0.17	+1.9
16,581	-		GFF4657	0.54	-0.2
17,073	+				+0.1
17,073	+				-0.4
17,073	+				+1.5
17,073	+				+0.1
17,073	+				+0.3
17,073	+				-1.1
17,073	+				-1.0
17,073	+				+0.5
17,073	+				+0.2
17,073	+				+0.3
17,073	+				-0.2
17,073	+				-0.8
17,074	-				+0.7
17,074	-				+0.1
17,074	-				-1.1
17,074	-				-0.1
17,074	-				-0.4
17,074	-				-0.5
17,074	-				+0.4
17,074	-				-0.4
17,100	+		GFF4658	0.11	-1.3
17,100	+		GFF4658	0.11	-0.1
17,100	+		GFF4658	0.11	-0.5
17,101	-		GFF4658	0.11	-0.4
17,116	+		GFF4658	0.14	-0.0
17,116	+		GFF4658	0.14	-0.8
17,117	-		GFF4658	0.14	-0.4
17,117	-		GFF4658	0.14	-0.3
17,117	-		GFF4658	0.14	-0.3
17,117	-		GFF4658	0.14	+0.4
17,117	-		GFF4658	0.14	+0.0
17,256	+		GFF4658	0.41	-0.7
17,256	+		GFF4658	0.41	-0.4
17,256	+		GFF4658	0.41	+0.6
17,256	+		GFF4658	0.41	+0.0
17,257	-		GFF4658	0.41	+0.5
17,257	-		GFF4658	0.41	-2.1
17,346	+		GFF4658	0.59	-0.5
17,346	+		GFF4658	0.59	-0.8
17,346	+		GFF4658	0.59	-2.3
17,347	-		GFF4658	0.59	+1.8
17,347	-		GFF4658	0.59	+0.1
17,347	-		GFF4658	0.59	+0.4
17,347	-		GFF4658	0.59	+0.1
17,347	-		GFF4658	0.59	+0.9
17,377	-		GFF4658	0.65	-3.0
17,649	+		GFF4659	0.68	+0.5
17,649	+		GFF4659	0.68	-0.4
17,649	+		GFF4659	0.68	-0.0
17,649	+		GFF4659	0.68	-0.6
17,649	+		GFF4659	0.68	-0.4
17,650	-		GFF4659	0.69	-1.1
17,650	-		GFF4659	0.69	-0.1
17,650	-		GFF4659	0.69	+0.0
17,650	-		GFF4659	0.69	-1.3
17,712	+				+0.0
17,713	-				-0.1
17,900	+		GFF4660	0.23	-0.2
17,900	+		GFF4660	0.23	-0.1
17,900	+		GFF4660	0.23	+0.2
17,901	-		GFF4660	0.23	-0.8
17,901	-		GFF4660	0.23	-0.4
17,901	-		GFF4660	0.23	-0.9
17,961	+		GFF4660	0.30	-2.0
17,961	+		GFF4660	0.30	+0.2
17,961	+		GFF4660	0.30	+1.1
17,961	+		GFF4660	0.30	+0.3
17,961	+		GFF4660	0.30	+1.5
17,961	+		GFF4660	0.30	-0.8
17,961	+		GFF4660	0.30	+0.3
17,961	+		GFF4660	0.30	+0.2
17,962	-		GFF4660	0.30	+0.1
17,962	-		GFF4660	0.30	-0.6
17,962	-		GFF4660	0.30	-0.4
17,962	-		GFF4660	0.30	+0.3
17,962	-		GFF4660	0.30	+0.8
17,962	-		GFF4660	0.30	-0.7
17,962	-		GFF4660	0.30	-0.5
18,002	+		GFF4660	0.34	-0.4
18,002	+		GFF4660	0.34	-1.4
18,002	+		GFF4660	0.34	-1.0
18,003	-		GFF4660	0.34	+1.3
18,003	-		GFF4660	0.34	-0.2
18,003	-		GFF4660	0.34	-0.1
18,003	-		GFF4660	0.34	-0.1
18,003	-		GFF4660	0.34	-0.5
18,003	-		GFF4660	0.34	-1.1