Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4654 and GFF4655 are separated by 100 nucleotides GFF4655 and GFF4656 are separated by 13 nucleotides
GFF4654 - Acid phosphatase (EC 3.1.3.2), at 10,472 to 12,688
GFF4654
GFF4655 - SAM-dependent methyltransferase, at 12,789 to 13,400
GFF4655
GFF4656 - TonB-dependent siderophore receptor, at 13,414 to 15,966
GFF4656
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 11.825 kb on + strand, within GFF4654 at 11.826 kb on - strand, within GFF4654 at 11.826 kb on - strand, within GFF4654 at 11.873 kb on + strand, within GFF4654 at 11.873 kb on + strand, within GFF4654 at 11.874 kb on - strand, within GFF4654 at 11.874 kb on - strand, within GFF4654 at 12.010 kb on + strand, within GFF4654 at 12.038 kb on + strand, within GFF4654 at 12.038 kb on + strand, within GFF4654 at 12.158 kb on + strand, within GFF4654 at 12.158 kb on + strand, within GFF4654 at 12.158 kb on + strand, within GFF4654 at 12.158 kb on + strand, within GFF4654 at 12.158 kb on + strand, within GFF4654 at 12.159 kb on - strand, within GFF4654 at 12.159 kb on - strand, within GFF4654 at 12.159 kb on - strand, within GFF4654 at 12.159 kb on - strand, within GFF4654 at 12.159 kb on - strand, within GFF4654 at 12.161 kb on + strand, within GFF4654 at 12.161 kb on + strand, within GFF4654 at 12.161 kb on + strand, within GFF4654 at 12.162 kb on - strand, within GFF4654 at 12.162 kb on - strand, within GFF4654 at 12.162 kb on - strand, within GFF4654 at 12.162 kb on - strand, within GFF4654 at 12.162 kb on - strand, within GFF4654 at 12.275 kb on + strand, within GFF4654 at 12.275 kb on + strand, within GFF4654 at 12.275 kb on + strand, within GFF4654 at 12.275 kb on + strand, within GFF4654 at 12.275 kb on + strand, within GFF4654 at 12.276 kb on - strand, within GFF4654 at 12.276 kb on - strand, within GFF4654 at 12.276 kb on - strand, within GFF4654 at 12.276 kb on - strand, within GFF4654 at 12.407 kb on + strand, within GFF4654 at 12.407 kb on + strand, within GFF4654 at 12.407 kb on + strand, within GFF4654 at 12.407 kb on + strand, within GFF4654 at 12.408 kb on - strand, within GFF4654 at 12.408 kb on - strand, within GFF4654 at 12.428 kb on + strand, within GFF4654 at 12.428 kb on + strand, within GFF4654 at 12.428 kb on + strand, within GFF4654 at 12.429 kb on - strand, within GFF4654 at 12.429 kb on - strand, within GFF4654 at 12.429 kb on - strand, within GFF4654 at 12.536 kb on + strand at 12.536 kb on + strand at 12.537 kb on - strand at 12.747 kb on + strand at 12.747 kb on + strand at 13.107 kb on + strand, within GFF4655 at 13.108 kb on - strand, within GFF4655 at 13.108 kb on - strand, within GFF4655 at 13.202 kb on + strand, within GFF4655 at 13.203 kb on - strand, within GFF4655 at 13.203 kb on - strand, within GFF4655 at 13.203 kb on - strand, within GFF4655 at 13.206 kb on + strand, within GFF4655 at 13.206 kb on + strand, within GFF4655 at 13.206 kb on + strand, within GFF4655 at 13.206 kb on + strand, within GFF4655 at 13.206 kb on + strand, within GFF4655 at 13.207 kb on - strand, within GFF4655 at 13.215 kb on + strand, within GFF4655 at 13.215 kb on + strand, within GFF4655 at 13.216 kb on - strand, within GFF4655 at 13.424 kb on + strand at 13.425 kb on - strand at 13.425 kb on - strand at 13.460 kb on + strand at 13.460 kb on + strand at 13.461 kb on - strand at 13.461 kb on - strand at 13.473 kb on - strand at 13.499 kb on + strand at 13.499 kb on + strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.500 kb on - strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.560 kb on - strand at 13.560 kb on - strand at 13.586 kb on + strand at 13.587 kb on - strand at 13.587 kb on - strand at 13.618 kb on + strand at 13.618 kb on + strand at 13.619 kb on - strand at 13.640 kb on + strand at 13.640 kb on + strand at 13.640 kb on + strand at 13.641 kb on - strand at 13.641 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.644 kb on - strand at 13.709 kb on + strand, within GFF4656 at 13.709 kb on + strand, within GFF4656 at 13.710 kb on - strand, within GFF4656 at 13.710 kb on - strand, within GFF4656 at 13.793 kb on + strand, within GFF4656 at 13.794 kb on - strand, within GFF4656 at 13.794 kb on - strand, within GFF4656 at 13.794 kb on - strand, within GFF4656 at 13.794 kb on - strand, within GFF4656 at 13.910 kb on + strand, within GFF4656 at 13.910 kb on + strand, within GFF4656 at 13.952 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.012 kb on + strand, within GFF4656 at 14.013 kb on - strand, within GFF4656 at 14.075 kb on + strand, within GFF4656 at 14.075 kb on + strand, within GFF4656 at 14.075 kb on + strand, within GFF4656 at 14.075 kb on + strand, within GFF4656 at 14.076 kb on - strand, within GFF4656 at 14.076 kb on - strand, within GFF4656 at 14.076 kb on - strand, within GFF4656 at 14.076 kb on - strand, within GFF4656 at 14.076 kb on - strand, within GFF4656 at 14.076 kb on - strand, within GFF4656 at 14.097 kb on - strand, within GFF4656 at 14.123 kb on + strand, within GFF4656 at 14.123 kb on + strand, within GFF4656 at 14.123 kb on + strand, within GFF4656 at 14.124 kb on - strand, within GFF4656 at 14.124 kb on - strand, within GFF4656 at 14.124 kb on - strand, within GFF4656 at 14.139 kb on - strand, within GFF4656 at 14.184 kb on - strand, within GFF4656 at 14.207 kb on + strand, within GFF4656 at 14.207 kb on + strand, within GFF4656 at 14.207 kb on + strand, within GFF4656 at 14.208 kb on - strand, within GFF4656 at 14.208 kb on - strand, within GFF4656 at 14.208 kb on - strand, within GFF4656 at 14.208 kb on - strand, within GFF4656 at 14.208 kb on - strand, within GFF4656 at 14.219 kb on + strand, within GFF4656 at 14.219 kb on + strand, within GFF4656 at 14.219 kb on + strand, within GFF4656 at 14.219 kb on + strand, within GFF4656 at 14.220 kb on - strand, within GFF4656 at 14.220 kb on - strand, within GFF4656 at 14.285 kb on + strand, within GFF4656 at 14.285 kb on + strand, within GFF4656 at 14.285 kb on + strand, within GFF4656 at 14.285 kb on + strand, within GFF4656 at 14.286 kb on - strand, within GFF4656 at 14.286 kb on - strand, within GFF4656 at 14.286 kb on - strand, within GFF4656 at 14.320 kb on - strand, within GFF4656 at 14.366 kb on + strand, within GFF4656 at 14.366 kb on + strand, within GFF4656 at 14.367 kb on - strand, within GFF4656 at 14.367 kb on - strand, within GFF4656 at 14.367 kb on - strand, within GFF4656 at 14.367 kb on - strand, within GFF4656 at 14.370 kb on + strand, within GFF4656 at 14.370 kb on + strand, within GFF4656 at 14.371 kb on - strand, within GFF4656 at 14.371 kb on - strand, within GFF4656 at 14.371 kb on - strand, within GFF4656 at 14.371 kb on - strand, within GFF4656 at 14.371 kb on - strand, within GFF4656
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 11,825 + GFF4654 0.61 -0.7 11,826 - GFF4654 0.61 -0.1 11,826 - GFF4654 0.61 -0.4 11,873 + GFF4654 0.63 -0.6 11,873 + GFF4654 0.63 -0.5 11,874 - GFF4654 0.63 -0.6 11,874 - GFF4654 0.63 +1.0 12,010 + GFF4654 0.69 -0.5 12,038 + GFF4654 0.71 +0.2 12,038 + GFF4654 0.71 +0.2 12,158 + GFF4654 0.76 -0.4 12,158 + GFF4654 0.76 -1.8 12,158 + GFF4654 0.76 -0.6 12,158 + GFF4654 0.76 +0.2 12,158 + GFF4654 0.76 -0.6 12,159 - GFF4654 0.76 +0.2 12,159 - GFF4654 0.76 -0.1 12,159 - GFF4654 0.76 +0.1 12,159 - GFF4654 0.76 -0.3 12,159 - GFF4654 0.76 -0.3 12,161 + GFF4654 0.76 -0.6 12,161 + GFF4654 0.76 -1.9 12,161 + GFF4654 0.76 +0.1 12,162 - GFF4654 0.76 -0.3 12,162 - GFF4654 0.76 -0.2 12,162 - GFF4654 0.76 -0.1 12,162 - GFF4654 0.76 +0.2 12,162 - GFF4654 0.76 -2.1 12,275 + GFF4654 0.81 -1.6 12,275 + GFF4654 0.81 -0.6 12,275 + GFF4654 0.81 -0.3 12,275 + GFF4654 0.81 -1.2 12,275 + GFF4654 0.81 +1.2 12,276 - GFF4654 0.81 +0.3 12,276 - GFF4654 0.81 -0.3 12,276 - GFF4654 0.81 -0.2 12,276 - GFF4654 0.81 +0.2 12,407 + GFF4654 0.87 +0.2 12,407 + GFF4654 0.87 -1.1 12,407 + GFF4654 0.87 +1.1 12,407 + GFF4654 0.87 -0.2 12,408 - GFF4654 0.87 +0.7 12,408 - GFF4654 0.87 +0.0 12,428 + GFF4654 0.88 -0.4 12,428 + GFF4654 0.88 +0.2 12,428 + GFF4654 0.88 +1.5 12,429 - GFF4654 0.88 -0.3 12,429 - GFF4654 0.88 +0.4 12,429 - GFF4654 0.88 -0.1 12,536 + +1.0 12,536 + -0.3 12,537 - -0.8 12,747 + -0.1 12,747 + -1.1 13,107 + GFF4655 0.52 -0.1 13,108 - GFF4655 0.52 -0.4 13,108 - GFF4655 0.52 -1.0 13,202 + GFF4655 0.67 -0.3 13,203 - GFF4655 0.68 +0.9 13,203 - GFF4655 0.68 -0.8 13,203 - GFF4655 0.68 +0.5 13,206 + GFF4655 0.68 -0.1 13,206 + GFF4655 0.68 +0.2 13,206 + GFF4655 0.68 +0.4 13,206 + GFF4655 0.68 -0.8 13,206 + GFF4655 0.68 +0.1 13,207 - GFF4655 0.68 -0.0 13,215 + GFF4655 0.70 -0.5 13,215 + GFF4655 0.70 -0.5 13,216 - GFF4655 0.70 +1.2 13,424 + -1.1 13,425 - -1.0 13,425 - -0.2 13,460 + +0.7 13,460 + +0.1 13,461 - -0.7 13,461 - +0.4 13,473 - +0.2 13,499 + -0.8 13,499 + -1.8 13,500 - -1.3 13,500 - -0.1 13,500 - -0.6 13,500 - +0.9 13,500 - +0.9 13,500 - -0.1 13,500 - -1.1 13,500 - +0.4 13,559 + -0.4 13,559 + -1.5 13,559 + -0.7 13,559 + -0.7 13,560 - +0.5 13,560 - -1.8 13,586 + -0.6 13,587 - -0.8 13,587 - +0.4 13,618 + -0.2 13,618 + +0.4 13,619 - +0.9 13,640 + -1.7 13,640 + -0.4 13,640 + +0.0 13,641 - -2.1 13,641 - -0.1 13,644 - +0.2 13,644 - +0.1 13,644 - +0.2 13,644 - +0.3 13,644 - -1.3 13,644 - +0.9 13,644 - +0.7 13,644 - +0.0 13,709 + GFF4656 0.12 -1.5 13,709 + GFF4656 0.12 -0.3 13,710 - GFF4656 0.12 +1.5 13,710 - GFF4656 0.12 -0.6 13,793 + GFF4656 0.15 +0.5 13,794 - GFF4656 0.15 -0.7 13,794 - GFF4656 0.15 +1.3 13,794 - GFF4656 0.15 -0.2 13,794 - GFF4656 0.15 -1.0 13,910 + GFF4656 0.19 -0.6 13,910 + GFF4656 0.19 -0.1 13,952 + GFF4656 0.21 -1.0 14,012 + GFF4656 0.23 -1.0 14,012 + GFF4656 0.23 -0.6 14,012 + GFF4656 0.23 -2.2 14,012 + GFF4656 0.23 -0.3 14,012 + GFF4656 0.23 -0.7 14,012 + GFF4656 0.23 -0.1 14,012 + GFF4656 0.23 -0.1 14,012 + GFF4656 0.23 -0.7 14,012 + GFF4656 0.23 -0.2 14,013 - GFF4656 0.23 -1.0 14,075 + GFF4656 0.26 +0.2 14,075 + GFF4656 0.26 -0.6 14,075 + GFF4656 0.26 -0.6 14,075 + GFF4656 0.26 -0.2 14,076 - GFF4656 0.26 +0.3 14,076 - GFF4656 0.26 -0.6 14,076 - GFF4656 0.26 -1.0 14,076 - GFF4656 0.26 +0.5 14,076 - GFF4656 0.26 +1.5 14,076 - GFF4656 0.26 -2.4 14,097 - GFF4656 0.27 -2.8 14,123 + GFF4656 0.28 +0.1 14,123 + GFF4656 0.28 +0.0 14,123 + GFF4656 0.28 -0.5 14,124 - GFF4656 0.28 -1.6 14,124 - GFF4656 0.28 -0.8 14,124 - GFF4656 0.28 -1.9 14,139 - GFF4656 0.28 +0.1 14,184 - GFF4656 0.30 -0.3 14,207 + GFF4656 0.31 -1.0 14,207 + GFF4656 0.31 -1.5 14,207 + GFF4656 0.31 +0.7 14,208 - GFF4656 0.31 -0.6 14,208 - GFF4656 0.31 -0.5 14,208 - GFF4656 0.31 -1.8 14,208 - GFF4656 0.31 -0.6 14,208 - GFF4656 0.31 -0.3 14,219 + GFF4656 0.32 -0.8 14,219 + GFF4656 0.32 +0.2 14,219 + GFF4656 0.32 -0.0 14,219 + GFF4656 0.32 -0.4 14,220 - GFF4656 0.32 -0.5 14,220 - GFF4656 0.32 -0.8 14,285 + GFF4656 0.34 -0.0 14,285 + GFF4656 0.34 -0.2 14,285 + GFF4656 0.34 +0.0 14,285 + GFF4656 0.34 +0.3 14,286 - GFF4656 0.34 +0.4 14,286 - GFF4656 0.34 +0.2 14,286 - GFF4656 0.34 -1.2 14,320 - GFF4656 0.35 -0.1 14,366 + GFF4656 0.37 -0.2 14,366 + GFF4656 0.37 -0.1 14,367 - GFF4656 0.37 -0.6 14,367 - GFF4656 0.37 +1.7 14,367 - GFF4656 0.37 +0.1 14,367 - GFF4656 0.37 +0.3 14,370 + GFF4656 0.37 +0.0 14,370 + GFF4656 0.37 +0.2 14,371 - GFF4656 0.37 -0.4 14,371 - GFF4656 0.37 +0.2 14,371 - GFF4656 0.37 +0.0 14,371 - GFF4656 0.37 -0.1 14,371 - GFF4656 0.37 +0.1
Or see this region's nucleotide sequence