Strain Fitness in Variovorax sp. SCN45 around GFF4580

Experiment: M9 with calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4580 and GFF4581 overlap by 23 nucleotidesGFF4581 and GFF4582 are separated by 352 nucleotides GFF4580 - hypothetical protein, at 220,848 to 222,875 GFF4580 GFF4581 - hypothetical protein, at 222,853 to 223,146 GFF4581 GFF4582 - TRAP-type C4-dicarboxylate transport system, small permease component, at 223,499 to 224,098 GFF4582 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.096 kb on + strandat 220.096 kb on + strandat 220.165 kb on + strandat 220.321 kb on - strandat 220.327 kb on + strandat 220.328 kb on - strandat 220.328 kb on - strandat 220.372 kb on + strandat 220.372 kb on + strandat 220.394 kb on + strandat 220.394 kb on + strandat 220.394 kb on + strandat 220.395 kb on - strandat 220.424 kb on + strandat 220.425 kb on - strandat 220.480 kb on - strandat 220.493 kb on + strandat 220.493 kb on + strandat 220.493 kb on + strandat 220.494 kb on - strandat 220.581 kb on + strandat 220.611 kb on - strandat 220.697 kb on + strandat 220.747 kb on - strandat 220.765 kb on + strandat 220.765 kb on + strandat 220.765 kb on + strandat 220.765 kb on + strandat 220.766 kb on - strandat 220.766 kb on - strandat 220.766 kb on - strandat 220.837 kb on - strandat 220.874 kb on + strandat 220.932 kb on + strandat 220.933 kb on - strandat 221.108 kb on + strand, within GFF4580at 221.198 kb on - strand, within GFF4580at 221.205 kb on + strand, within GFF4580at 221.224 kb on - strand, within GFF4580at 221.274 kb on + strand, within GFF4580at 221.274 kb on + strand, within GFF4580at 221.274 kb on + strand, within GFF4580at 221.275 kb on - strand, within GFF4580at 221.276 kb on + strand, within GFF4580at 221.293 kb on + strand, within GFF4580at 221.294 kb on - strand, within GFF4580at 221.298 kb on - strand, within GFF4580at 221.463 kb on - strand, within GFF4580at 221.537 kb on + strand, within GFF4580at 221.537 kb on + strand, within GFF4580at 221.584 kb on - strand, within GFF4580at 221.584 kb on - strand, within GFF4580at 221.584 kb on - strand, within GFF4580at 221.585 kb on + strand, within GFF4580at 221.586 kb on - strand, within GFF4580at 221.586 kb on - strand, within GFF4580at 221.621 kb on + strand, within GFF4580at 221.622 kb on - strand, within GFF4580at 221.625 kb on + strand, within GFF4580at 221.724 kb on + strand, within GFF4580at 221.725 kb on - strand, within GFF4580at 221.803 kb on - strand, within GFF4580at 222.072 kb on - strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.113 kb on + strand, within GFF4580at 222.114 kb on - strand, within GFF4580at 222.139 kb on + strand, within GFF4580at 222.140 kb on - strand, within GFF4580at 222.140 kb on - strand, within GFF4580at 222.147 kb on + strand, within GFF4580at 222.147 kb on + strand, within GFF4580at 222.147 kb on + strand, within GFF4580at 222.148 kb on - strand, within GFF4580at 222.154 kb on + strand, within GFF4580at 222.155 kb on - strand, within GFF4580at 222.223 kb on + strand, within GFF4580at 222.224 kb on - strand, within GFF4580at 222.239 kb on - strand, within GFF4580at 222.239 kb on - strand, within GFF4580at 222.239 kb on - strand, within GFF4580at 222.354 kb on + strand, within GFF4580at 222.360 kb on + strand, within GFF4580at 222.361 kb on - strand, within GFF4580at 222.361 kb on - strand, within GFF4580at 222.405 kb on + strand, within GFF4580at 222.406 kb on - strand, within GFF4580at 222.409 kb on - strand, within GFF4580at 222.409 kb on - strand, within GFF4580at 222.422 kb on + strand, within GFF4580at 222.628 kb on + strand, within GFF4580at 222.628 kb on + strand, within GFF4580at 222.629 kb on - strand, within GFF4580at 222.675 kb on + strandat 222.682 kb on + strandat 222.683 kb on - strandat 222.683 kb on - strandat 222.687 kb on - strandat 222.790 kb on - strandat 222.790 kb on - strandat 222.860 kb on + strandat 222.860 kb on + strandat 222.861 kb on - strandat 222.861 kb on - strandat 222.910 kb on + strand, within GFF4581at 222.911 kb on - strand, within GFF4581at 223.040 kb on - strand, within GFF4581at 223.040 kb on - strand, within GFF4581at 223.041 kb on + strand, within GFF4581at 223.042 kb on - strand, within GFF4581at 223.042 kb on - strand, within GFF4581at 223.127 kb on - strandat 223.135 kb on + strandat 223.135 kb on + strandat 223.135 kb on + strandat 223.368 kb on + strandat 223.384 kb on - strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.406 kb on + strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.407 kb on - strandat 223.437 kb on + strandat 223.489 kb on - strandat 223.593 kb on + strand, within GFF4582at 223.594 kb on - strand, within GFF4582at 223.594 kb on - strand, within GFF4582at 223.670 kb on + strand, within GFF4582at 223.787 kb on + strand, within GFF4582at 223.787 kb on + strand, within GFF4582

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
remove
220,096 + -2.1
220,096 + -0.6
220,165 + -0.6
220,321 - -0.9
220,327 + -0.4
220,328 - -1.6
220,328 - -0.3
220,372 + -0.4
220,372 + -0.6
220,394 + +0.6
220,394 + -0.2
220,394 + -0.5
220,395 - -0.1
220,424 + -0.0
220,425 - -1.0
220,480 - -0.9
220,493 + -0.4
220,493 + +0.7
220,493 + -0.6
220,494 - +1.0
220,581 + -1.6
220,611 - -0.1
220,697 + +2.3
220,747 - -0.3
220,765 + +0.3
220,765 + -0.8
220,765 + +0.1
220,765 + -0.1
220,766 - -1.0
220,766 - -1.1
220,766 - -1.3
220,837 - +1.2
220,874 + +0.9
220,932 + -0.0
220,933 - -0.1
221,108 + GFF4580 0.13 -0.8
221,198 - GFF4580 0.17 -0.1
221,205 + GFF4580 0.18 +0.9
221,224 - GFF4580 0.19 -0.5
221,274 + GFF4580 0.21 -0.0
221,274 + GFF4580 0.21 +0.0
221,274 + GFF4580 0.21 -0.9
221,275 - GFF4580 0.21 -0.2
221,276 + GFF4580 0.21 +1.0
221,293 + GFF4580 0.22 +1.3
221,294 - GFF4580 0.22 -0.1
221,298 - GFF4580 0.22 -0.9
221,463 - GFF4580 0.30 -0.4
221,537 + GFF4580 0.34 +0.2
221,537 + GFF4580 0.34 +0.2
221,584 - GFF4580 0.36 -0.3
221,584 - GFF4580 0.36 -0.3
221,584 - GFF4580 0.36 +0.7
221,585 + GFF4580 0.36 +0.2
221,586 - GFF4580 0.36 -0.1
221,586 - GFF4580 0.36 -0.2
221,621 + GFF4580 0.38 +1.7
221,622 - GFF4580 0.38 +0.6
221,625 + GFF4580 0.38 -1.0
221,724 + GFF4580 0.43 +0.2
221,725 - GFF4580 0.43 -0.2
221,803 - GFF4580 0.47 -0.0
222,072 - GFF4580 0.60 -0.2
222,113 + GFF4580 0.62 -0.3
222,113 + GFF4580 0.62 -0.3
222,113 + GFF4580 0.62 -1.0
222,113 + GFF4580 0.62 +0.4
222,114 - GFF4580 0.62 +2.5
222,139 + GFF4580 0.64 -0.1
222,140 - GFF4580 0.64 +0.3
222,140 - GFF4580 0.64 -0.3
222,147 + GFF4580 0.64 -0.5
222,147 + GFF4580 0.64 +0.1
222,147 + GFF4580 0.64 +0.1
222,148 - GFF4580 0.64 +0.9
222,154 + GFF4580 0.64 +0.5
222,155 - GFF4580 0.64 -0.0
222,223 + GFF4580 0.68 +0.1
222,224 - GFF4580 0.68 -0.3
222,239 - GFF4580 0.69 -0.2
222,239 - GFF4580 0.69 -0.1
222,239 - GFF4580 0.69 +0.3
222,354 + GFF4580 0.74 +0.8
222,360 + GFF4580 0.75 -0.0
222,361 - GFF4580 0.75 -0.0
222,361 - GFF4580 0.75 -0.9
222,405 + GFF4580 0.77 -0.9
222,406 - GFF4580 0.77 +0.9
222,409 - GFF4580 0.77 -1.1
222,409 - GFF4580 0.77 -0.3
222,422 + GFF4580 0.78 -3.3
222,628 + GFF4580 0.88 -0.6
222,628 + GFF4580 0.88 -0.0
222,629 - GFF4580 0.88 +0.3
222,675 + +0.1
222,682 + -0.3
222,683 - -2.4
222,683 - -0.2
222,687 - +0.3
222,790 - -0.8
222,790 - +0.7
222,860 + +1.6
222,860 + +0.2
222,861 - +0.6
222,861 - -0.9
222,910 + GFF4581 0.19 +0.4
222,911 - GFF4581 0.20 -0.2
223,040 - GFF4581 0.64 -0.2
223,040 - GFF4581 0.64 -0.8
223,041 + GFF4581 0.64 -0.1
223,042 - GFF4581 0.64 -0.4
223,042 - GFF4581 0.64 -0.7
223,127 - +0.3
223,135 + -1.3
223,135 + +0.9
223,135 + -0.3
223,368 + -0.3
223,384 - -0.4
223,406 + +0.8
223,406 + -1.8
223,406 + -0.2
223,406 + -1.4
223,406 + -0.1
223,406 + -0.0
223,406 + -0.1
223,406 + +0.1
223,407 - -0.2
223,407 - -0.5
223,407 - -0.3
223,407 - -0.7
223,407 - -0.3
223,437 + -0.9
223,489 - -0.2
223,593 + GFF4582 0.16 -1.0
223,594 - GFF4582 0.16 -0.1
223,594 - GFF4582 0.16 +0.3
223,670 + GFF4582 0.28 +0.6
223,787 + GFF4582 0.48 -1.2
223,787 + GFF4582 0.48 +0.1

Or see this region's nucleotide sequence