Strain Fitness in Variovorax sp. SCN45 around GFF4572

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4571 and GFF4572 overlap by 4 nucleotidesGFF4572 and GFF4573 are separated by 61 nucleotides GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250 GFF4571 GFF4572 - Enoyl-CoA hydratase (EC 4.2.1.17), at 210,247 to 211,074 GFF4572 GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344 GFF4573 Position (kb) 210 211 212Strain fitness (log2 ratio) -1 0 1at 209.495 kb on + strand, within GFF4571at 209.496 kb on - strand, within GFF4571at 209.572 kb on - strand, within GFF4571at 209.885 kb on + strand, within GFF4571at 209.886 kb on - strand, within GFF4571at 210.155 kb on + strandat 210.155 kb on + strandat 210.218 kb on + strandat 210.218 kb on + strandat 210.218 kb on + strandat 210.219 kb on - strandat 210.219 kb on - strandat 210.219 kb on - strandat 210.219 kb on - strandat 210.352 kb on + strand, within GFF4572at 210.352 kb on + strand, within GFF4572at 210.353 kb on - strand, within GFF4572at 210.649 kb on + strand, within GFF4572at 210.649 kb on + strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.650 kb on - strand, within GFF4572at 210.661 kb on + strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 210.662 kb on - strand, within GFF4572at 211.326 kb on - strand, within GFF4573at 211.326 kb on - strand, within GFF4573at 211.475 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.511 kb on + strand, within GFF4573at 211.512 kb on - strand, within GFF4573at 211.512 kb on - strand, within GFF4573at 211.566 kb on - strand, within GFF4573at 211.673 kb on + strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.674 kb on - strand, within GFF4573at 211.703 kb on + strand, within GFF4573at 211.778 kb on + strand, within GFF4573at 211.779 kb on - strand, within GFF4573at 211.779 kb on - strand, within GFF4573at 211.781 kb on + strand, within GFF4573at 211.781 kb on + strand, within GFF4573at 211.781 kb on + strand, within GFF4573at 211.782 kb on - strand, within GFF4573

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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209,495 + GFF4571 0.34 -1.2
209,496 - GFF4571 0.34 -0.0
209,572 - GFF4571 0.41 -1.0
209,885 + GFF4571 0.68 -0.7
209,886 - GFF4571 0.68 -1.4
210,155 + -0.4
210,155 + +0.1
210,218 + -1.0
210,218 + -0.8
210,218 + -0.2
210,219 - -0.5
210,219 - -1.1
210,219 - +1.2
210,219 - +0.0
210,352 + GFF4572 0.13 -0.1
210,352 + GFF4572 0.13 +0.3
210,353 - GFF4572 0.13 -0.4
210,649 + GFF4572 0.49 -0.2
210,649 + GFF4572 0.49 +0.1
210,650 - GFF4572 0.49 +0.1
210,650 - GFF4572 0.49 +0.6
210,650 - GFF4572 0.49 +0.3
210,650 - GFF4572 0.49 -1.1
210,661 + GFF4572 0.50 -0.1
210,662 - GFF4572 0.50 +0.2
210,662 - GFF4572 0.50 +0.6
210,662 - GFF4572 0.50 -0.3
210,662 - GFF4572 0.50 +0.6
211,326 - GFF4573 0.16 +0.4
211,326 - GFF4573 0.16 -0.6
211,475 + GFF4573 0.28 -1.0
211,511 + GFF4573 0.31 -0.6
211,511 + GFF4573 0.31 -1.3
211,511 + GFF4573 0.31 +0.3
211,511 + GFF4573 0.31 -0.4
211,511 + GFF4573 0.31 +0.5
211,511 + GFF4573 0.31 +1.6
211,512 - GFF4573 0.31 +0.6
211,512 - GFF4573 0.31 -0.3
211,566 - GFF4573 0.36 -0.1
211,673 + GFF4573 0.44 -0.3
211,674 - GFF4573 0.44 +0.4
211,674 - GFF4573 0.44 +0.4
211,674 - GFF4573 0.44 -0.4
211,674 - GFF4573 0.44 -0.4
211,674 - GFF4573 0.44 -0.4
211,703 + GFF4573 0.47 -0.3
211,778 + GFF4573 0.53 -0.2
211,779 - GFF4573 0.53 -0.6
211,779 - GFF4573 0.53 -0.1
211,781 + GFF4573 0.53 -0.3
211,781 + GFF4573 0.53 +0.7
211,781 + GFF4573 0.53 -0.4
211,782 - GFF4573 0.53 -0.2

Or see this region's nucleotide sequence