Strain Fitness in Variovorax sp. SCN45 around GFF4449

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
87,358	+				+0.3
87,358	+				-1.4
87,358	+				-1.7
87,359	-				-1.7
87,359	-				-2.4
87,433	-				-0.3
87,492	-				+0.3
87,533	+				-1.1
87,534	-				+0.3
87,534	-				+0.3
87,545	+				-0.7
87,577	+				+0.1
87,578	-				-0.4
87,578	-				-0.1
87,578	-				-0.2
87,616	-				-0.1
87,720	+		GFF4448	0.20	+0.2
87,720	+		GFF4448	0.20	-0.9
87,720	+		GFF4448	0.20	-0.8
87,720	+		GFF4448	0.20	+0.0
87,720	+		GFF4448	0.20	+0.5
87,720	+		GFF4448	0.20	-0.0
87,720	+		GFF4448	0.20	-2.1
87,720	+		GFF4448	0.20	-1.3
87,720	+		GFF4448	0.20	-0.4
87,720	+		GFF4448	0.20	+0.0
87,720	+		GFF4448	0.20	+0.5
87,720	+		GFF4448	0.20	-0.8
87,720	+		GFF4448	0.20	-0.0
87,720	+		GFF4448	0.20	-0.4
87,720	+		GFF4448	0.20	-0.3
87,720	+		GFF4448	0.20	-0.5
87,720	+		GFF4448	0.20	+0.1
87,720	+		GFF4448	0.20	+1.0
87,720	+		GFF4448	0.20	-0.0
87,720	+		GFF4448	0.20	-0.3
87,720	+		GFF4448	0.20	+1.4
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	-0.8
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	+0.3
87,721	-		GFF4448	0.20	-2.6
87,721	-		GFF4448	0.20	+0.4
87,721	-		GFF4448	0.20	-0.0
87,721	-		GFF4448	0.20	+0.8
87,721	-		GFF4448	0.20	-1.0
87,721	-		GFF4448	0.20	-0.2
87,721	-		GFF4448	0.20	+0.1
87,721	-		GFF4448	0.20	-1.1
87,721	-		GFF4448	0.20	-0.5
87,721	-		GFF4448	0.20	+0.2
87,721	-		GFF4448	0.20	-0.6
87,721	-		GFF4448	0.20	-0.3
87,721	-		GFF4448	0.20	-0.8
87,721	-		GFF4448	0.20	+0.3
87,721	-		GFF4448	0.20	+0.3
87,721	-		GFF4448	0.20	+0.2
87,721	-		GFF4448	0.20	+0.2
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	-1.1
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	+0.3
87,721	-		GFF4448	0.20	-0.5
87,721	-		GFF4448	0.20	+0.6
87,721	-		GFF4448	0.20	-0.1
87,721	-		GFF4448	0.20	+0.4
87,721	-		GFF4448	0.20	+0.1
87,721	-		GFF4448	0.20	+0.9
87,721	-		GFF4448	0.20	-0.4
87,730	-		GFF4448	0.22	+0.0
87,756	+		GFF4448	0.27	-0.7
87,756	+		GFF4448	0.27	-0.5
87,756	+		GFF4448	0.27	-0.3
87,757	-		GFF4448	0.27	+0.7
87,757	-		GFF4448	0.27	-0.6
87,757	-		GFF4448	0.27	-0.6
87,757	-		GFF4448	0.27	-0.4
87,786	+		GFF4448	0.32	-0.3
87,786	+		GFF4448	0.32	-1.6
87,786	+		GFF4448	0.32	-1.6
87,786	+		GFF4448	0.32	+0.2
87,786	+		GFF4448	0.32	+0.8
87,786	+		GFF4448	0.32	-0.1
87,787	-		GFF4448	0.33	+0.5
87,787	-		GFF4448	0.33	-0.4
87,787	-		GFF4448	0.33	-0.3
87,787	-		GFF4448	0.33	+0.5
87,787	-		GFF4448	0.33	-1.4
87,787	-		GFF4448	0.33	+0.1
87,787	-		GFF4448	0.33	+1.1
87,787	-		GFF4448	0.33	+1.1
87,787	-		GFF4448	0.33	+0.2
87,787	-		GFF4448	0.33	+1.3
87,787	-		GFF4448	0.33	+1.5
87,787	-		GFF4448	0.33	-0.4
87,903	+		GFF4448	0.54	-0.0
87,903	+		GFF4448	0.54	+3.5
87,904	-		GFF4448	0.55	-0.6
87,904	-		GFF4448	0.55	-0.2
88,189	+				-0.2
88,189	+				+0.9
88,189	+				+0.5
88,189	+				-0.4
88,189	+				+0.4
88,189	+				+0.1
88,189	+				-0.2
88,190	-				-1.3
88,190	-				-0.3
88,190	-				-0.4
88,190	-				-1.4
88,190	-				+0.4
88,190	-				-0.6
88,190	-				-0.8
88,190	-				+0.1
88,190	-				+0.5
88,190	-				-0.4
88,190	-				-0.8
88,228	+				-0.9
88,228	+				-0.1
88,228	+				-0.4
88,228	+				-2.1
88,228	+				-0.1
88,228	+				-0.1
88,228	+				-2.0
88,228	+				+0.7
88,228	+				-0.6
88,229	-				-0.5
88,229	-				-0.4
88,229	-				-0.4
88,242	+				-0.9
88,242	+				-0.4
88,242	+				-0.2
88,242	+				-0.1
88,242	+				-0.2
88,242	+				-0.4
88,242	+				-0.8
88,242	+				-0.3
88,242	+				+1.1
88,242	+				-0.4
88,242	+				-0.8
88,242	+				-0.6
88,242	+				+0.3
88,242	+				-1.3
88,242	+				-1.4
88,242	+				-0.7
88,242	+				+2.2
88,242	+				+1.9
88,243	-				-0.4
88,243	-				-0.5
88,243	-				-0.1
88,243	-				+0.5
88,243	-				-1.3
88,243	-				+0.1
88,243	-				+0.4
88,243	-				-1.4
88,243	-				+0.0
88,243	-				-0.7
88,243	-				+0.6
88,243	-				-0.8
88,243	-				-0.4
88,414	+		GFF4449	0.13	+0.8
88,441	+		GFF4449	0.15	+0.5
88,441	+		GFF4449	0.15	-0.1
88,441	+		GFF4449	0.15	-1.3
88,441	+		GFF4449	0.15	+0.4
88,441	+		GFF4449	0.15	-2.1
88,441	+		GFF4449	0.15	-1.6
88,441	+		GFF4449	0.15	+0.7
88,441	+		GFF4449	0.15	+0.5
88,441	+		GFF4449	0.15	-1.4
88,441	+		GFF4449	0.15	-2.7
88,442	-		GFF4449	0.15	-2.6
88,442	-		GFF4449	0.15	-0.5
88,442	-		GFF4449	0.15	-1.1
88,442	-		GFF4449	0.15	+0.1
88,442	-		GFF4449	0.15	+0.5
88,442	-		GFF4449	0.15	-0.3
88,442	-		GFF4449	0.15	+0.2
88,442	-		GFF4449	0.15	+0.2
88,513	+		GFF4449	0.19	-0.7
88,514	-		GFF4449	0.20	-1.2
88,514	-		GFF4449	0.20	-1.8
88,514	-		GFF4449	0.20	-0.2
88,514	-		GFF4449	0.20	+0.3
88,514	-		GFF4449	0.20	-1.2
88,514	-		GFF4449	0.20	-0.4
88,530	-		GFF4449	0.21	-0.4
88,530	-		GFF4449	0.21	-1.2
88,573	+		GFF4449	0.24	+0.1
88,573	+		GFF4449	0.24	-0.2
88,573	+		GFF4449	0.24	-0.4
88,573	+		GFF4449	0.24	-0.6
88,573	+		GFF4449	0.24	+1.5
88,573	+		GFF4449	0.24	-0.4
88,573	+		GFF4449	0.24	+0.3
88,573	+		GFF4449	0.24	-0.7
88,573	+		GFF4449	0.24	-1.3
88,573	+		GFF4449	0.24	-0.4
88,573	+		GFF4449	0.24	-0.1
88,573	+		GFF4449	0.24	-0.3
88,573	+		GFF4449	0.24	-0.2
88,573	+		GFF4449	0.24	+1.3
88,573	+		GFF4449	0.24	+0.0
88,573	+		GFF4449	0.24	-0.9
88,573	+		GFF4449	0.24	+1.9
88,573	+		GFF4449	0.24	+2.6
88,573	+		GFF4449	0.24	-0.4
88,573	+		GFF4449	0.24	-0.6
88,573	+		GFF4449	0.24	-0.6
88,573	+		GFF4449	0.24	+0.3
88,573	+		GFF4449	0.24	-0.2
88,574	-		GFF4449	0.24	+0.3
88,574	-		GFF4449	0.24	-0.8
88,574	-		GFF4449	0.24	+0.1
88,574	-		GFF4449	0.24	+0.6
88,574	-		GFF4449	0.24	-0.1
88,574	-		GFF4449	0.24	-0.5
88,574	-		GFF4449	0.24	+0.4
88,574	-		GFF4449	0.24	-0.1
88,574	-		GFF4449	0.24	-1.5
88,574	-		GFF4449	0.24	+1.6
88,574	-		GFF4449	0.24	-0.6
88,574	-		GFF4449	0.24	-0.3
88,574	-		GFF4449	0.24	-1.2
88,574	-		GFF4449	0.24	+0.2
88,574	-		GFF4449	0.24	+0.9
88,574	-		GFF4449	0.24	+0.2
88,574	-		GFF4449	0.24	+0.8
88,574	-		GFF4449	0.24	-0.1
88,574	-		GFF4449	0.24	-0.0
88,574	-		GFF4449	0.24	-0.9
88,574	-		GFF4449	0.24	+0.3
88,574	-		GFF4449	0.24	-0.1
88,574	-		GFF4449	0.24	-0.1
88,574	-		GFF4449	0.24	-0.1
88,574	-		GFF4449	0.24	-1.1
88,574	-		GFF4449	0.24	-0.7
88,574	-		GFF4449	0.24	-0.6
88,609	+		GFF4449	0.26	-0.3
88,609	+		GFF4449	0.26	-1.3
88,609	+		GFF4449	0.26	+0.0
88,609	+		GFF4449	0.26	+0.2
88,609	+		GFF4449	0.26	-0.2
88,609	+		GFF4449	0.26	+0.2
88,609	+		GFF4449	0.26	-0.4
88,609	+		GFF4449	0.26	-0.5
88,609	+		GFF4449	0.26	-0.9
88,609	+		GFF4449	0.26	+0.6
88,609	+		GFF4449	0.26	+0.3
88,609	+		GFF4449	0.26	+0.5
88,609	+		GFF4449	0.26	-0.5
88,609	+		GFF4449	0.26	-0.9
88,609	+		GFF4449	0.26	-0.9
88,609	+		GFF4449	0.26	+1.3
88,609	+		GFF4449	0.26	-0.2
88,609	+		GFF4449	0.26	+0.0
88,609	+		GFF4449	0.26	-0.7
88,609	+		GFF4449	0.26	-0.5
88,609	+		GFF4449	0.26	-0.1
88,610	-		GFF4449	0.26	+0.9
88,610	-		GFF4449	0.26	+1.6
88,610	-		GFF4449	0.26	+0.0
88,610	-		GFF4449	0.26	+0.6
88,610	-		GFF4449	0.26	-0.5
88,610	-		GFF4449	0.26	-1.1
88,610	-		GFF4449	0.26	-0.3
88,610	-		GFF4449	0.26	-0.2
88,610	-		GFF4449	0.26	-1.1
88,610	-		GFF4449	0.26	-1.0
88,610	-		GFF4449	0.26	-0.0
88,610	-		GFF4449	0.26	-2.0
88,610	-		GFF4449	0.26	-0.2
88,610	-		GFF4449	0.26	-0.3
88,610	-		GFF4449	0.26	+0.3
88,610	-		GFF4449	0.26	+2.6
88,610	-		GFF4449	0.26	-0.9
88,610	-		GFF4449	0.26	-0.5
88,610	-		GFF4449	0.26	+0.6
88,610	-		GFF4449	0.26	-0.1
88,610	-		GFF4449	0.26	-0.4
88,610	-		GFF4449	0.26	-0.1
88,610	-		GFF4449	0.26	+0.3
88,610	-		GFF4449	0.26	-0.5
88,610	-		GFF4449	0.26	+0.0
88,610	-		GFF4449	0.26	-0.5
88,610	-		GFF4449	0.26	-0.1
88,678	+		GFF4449	0.31	-1.2
88,678	+		GFF4449	0.31	+0.1
88,678	+		GFF4449	0.31	-0.6
88,678	+		GFF4449	0.31	-1.4
88,678	+		GFF4449	0.31	-0.7
88,678	+		GFF4449	0.31	-0.6
88,678	+		GFF4449	0.31	-0.2
88,678	+		GFF4449	0.31	+1.3
88,678	+		GFF4449	0.31	+0.2
88,678	+		GFF4449	0.31	+0.2
88,678	+		GFF4449	0.31	-0.6
88,678	+		GFF4449	0.31	-0.4
88,678	+		GFF4449	0.31	-1.5
88,679	-		GFF4449	0.31	+1.0
88,679	-		GFF4449	0.31	+1.1
88,679	-		GFF4449	0.31	-0.9
88,679	-		GFF4449	0.31	+0.1
88,679	-		GFF4449	0.31	-0.3
88,679	-		GFF4449	0.31	+0.7
88,679	-		GFF4449	0.31	-1.0
88,679	-		GFF4449	0.31	-0.9
88,679	-		GFF4449	0.31	-0.6
88,996	+		GFF4449	0.52	-0.6
88,996	+		GFF4449	0.52	+0.4
88,997	-		GFF4449	0.52	-0.5
88,997	-		GFF4449	0.52	-1.9
89,023	+		GFF4449	0.54	-1.3
89,023	+		GFF4449	0.54	-0.6
89,023	+		GFF4449	0.54	-0.8
89,023	+		GFF4449	0.54	-0.6
89,023	+		GFF4449	0.54	-0.4
89,023	+		GFF4449	0.54	-1.2
89,023	+		GFF4449	0.54	+0.6
89,023	+		GFF4449	0.54	+1.0
89,023	+		GFF4449	0.54	+0.3
89,024	-		GFF4449	0.54	-0.9
89,024	-		GFF4449	0.54	-0.7
89,024	-		GFF4449	0.54	+1.2
89,024	-		GFF4449	0.54	-0.1
89,024	-		GFF4449	0.54	-0.9
89,024	-		GFF4449	0.54	-0.7
89,024	-		GFF4449	0.54	+0.1
89,024	-		GFF4449	0.54	-0.6
89,024	-		GFF4449	0.54	-0.4
89,024	-		GFF4449	0.54	-0.9
89,024	-		GFF4449	0.54	-0.3
89,024	-		GFF4449	0.54	+0.6
89,024	-		GFF4449	0.54	-0.0
89,024	-		GFF4449	0.54	+0.8
89,024	-		GFF4449	0.54	-0.3
89,024	-		GFF4449	0.54	+0.5
89,024	-		GFF4449	0.54	-0.2
89,024	-		GFF4449	0.54	-0.7
89,024	-		GFF4449	0.54	-0.0
89,024	-		GFF4449	0.54	-1.0
89,024	-		GFF4449	0.54	-0.6
89,024	-		GFF4449	0.54	-0.6
89,170	+		GFF4449	0.64	-1.2
89,171	-		GFF4449	0.64	-0.5
89,171	-		GFF4449	0.64	-0.7
89,171	-		GFF4449	0.64	-1.2
89,171	-		GFF4449	0.64	-0.2
89,171	-		GFF4449	0.64	-0.2
89,171	-		GFF4449	0.64	+0.9
89,299	+		GFF4449	0.73	-0.3
89,300	-		GFF4449	0.73	+0.7
89,300	-		GFF4449	0.73	-0.3
89,300	-		GFF4449	0.73	+0.5
89,300	-		GFF4449	0.73	-0.7
89,300	-		GFF4449	0.73	+0.3
89,300	-		GFF4449	0.73	+0.6
89,300	-		GFF4449	0.73	-0.7
89,539	+		GFF4449	0.89	-0.2
89,539	+		GFF4449	0.89	-0.0
89,539	+		GFF4449	0.89	-0.5
89,539	+		GFF4449	0.89	-2.1
89,539	+		GFF4449	0.89	-0.7
89,539	+		GFF4449	0.89	-1.4
89,539	+		GFF4449	0.89	+0.2
89,540	-		GFF4449	0.89	-1.4
89,540	-		GFF4449	0.89	+0.2
89,540	-		GFF4449	0.89	-0.1
89,540	-		GFF4449	0.89	-0.9
89,540	-		GFF4449	0.89	-1.4
89,540	-		GFF4449	0.89	+0.9
89,540	-		GFF4449	0.89	+0.6
89,540	-		GFF4449	0.89	-0.6
89,540	-		GFF4449	0.89	-0.2
89,548	+		GFF4449	0.90	-0.0
89,548	+		GFF4449	0.90	-1.8
89,548	+		GFF4449	0.90	-1.1
89,548	+		GFF4449	0.90	+0.1
89,548	+		GFF4449	0.90	-0.1
89,548	+		GFF4449	0.90	+0.6
89,548	+		GFF4449	0.90	-0.2
89,549	-		GFF4449	0.90	+0.5
89,549	-		GFF4449	0.90	-0.5
89,549	-		GFF4449	0.90	-0.6
89,549	-		GFF4449	0.90	-0.3
89,549	-		GFF4449	0.90	+1.3
89,699	+				+1.3
89,699	+				-1.2
89,700	-				-0.4
89,700	-				-1.4
89,745	+				+0.6
89,745	+				-0.6
89,745	+				-0.1
89,745	+				-0.7
89,745	+				+0.6
89,745	+				+1.0
89,745	+				+0.3
89,746	-				-0.4
89,746	-				+0.2
89,746	-				+0.2
89,746	-				-0.1
89,746	-				+1.9
89,746	-				-0.0