Strain Fitness in Variovorax sp. SCN45 around GFF4416

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4414 and GFF4415 overlap by 4 nucleotidesGFF4415 and GFF4416 overlap by 4 nucleotidesGFF4416 and GFF4417 are separated by 12 nucleotides GFF4414 - Conjugative transfer protein TrbB, at 50,950 to 52,014 GFF4414 GFF4415 - Conjugative transfer protein TrbC, at 52,011 to 52,400 GFF4415 GFF4416 - Conjugative transfer protein TrbD, at 52,397 to 52,669 GFF4416 GFF4417 - Conjugative transfer protein TrbE, at 52,682 to 55,156 GFF4417 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1at 51.474 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.474 kb on - strand, within GFF4414at 51.889 kb on + strand, within GFF4414at 51.983 kb on + strandat 51.984 kb on - strandat 51.984 kb on - strandat 52.045 kb on + strandat 52.045 kb on + strandat 52.045 kb on + strandat 52.100 kb on + strand, within GFF4415at 52.100 kb on + strand, within GFF4415at 52.396 kb on + strandat 52.396 kb on + strandat 52.411 kb on + strandat 52.411 kb on + strandat 52.498 kb on + strand, within GFF4416at 52.591 kb on - strand, within GFF4416at 52.940 kb on + strand, within GFF4417at 52.941 kb on - strand, within GFF4417at 53.036 kb on + strand, within GFF4417at 53.036 kb on + strand, within GFF4417at 53.037 kb on - strand, within GFF4417at 53.037 kb on - strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.054 kb on + strand, within GFF4417at 53.055 kb on - strand, within GFF4417at 53.055 kb on - strand, within GFF4417at 53.055 kb on - strand, within GFF4417at 53.055 kb on - strand, within GFF4417at 53.055 kb on - strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.099 kb on + strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.100 kb on - strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.175 kb on + strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.176 kb on - strand, within GFF4417at 53.237 kb on + strand, within GFF4417at 53.237 kb on + strand, within GFF4417at 53.237 kb on + strand, within GFF4417at 53.237 kb on + strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.238 kb on - strand, within GFF4417at 53.267 kb on + strand, within GFF4417at 53.458 kb on + strand, within GFF4417at 53.458 kb on + strand, within GFF4417at 53.458 kb on + strand, within GFF4417at 53.459 kb on - strand, within GFF4417at 53.459 kb on - strand, within GFF4417at 53.556 kb on + strand, within GFF4417at 53.557 kb on - strand, within GFF4417at 53.557 kb on - strand, within GFF4417

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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51,474 - GFF4414 0.49 -0.6
51,474 - GFF4414 0.49 -0.1
51,474 - GFF4414 0.49 -0.3
51,474 - GFF4414 0.49 -0.6
51,889 + GFF4414 0.88 -1.9
51,983 + -0.1
51,984 - +0.3
51,984 - -1.4
52,045 + -0.9
52,045 + -1.2
52,045 + -0.2
52,100 + GFF4415 0.23 -0.6
52,100 + GFF4415 0.23 -0.5
52,396 + +0.5
52,396 + +0.5
52,411 + +0.8
52,411 + -0.4
52,498 + GFF4416 0.37 -1.1
52,591 - GFF4416 0.71 -0.9
52,940 + GFF4417 0.10 -0.0
52,941 - GFF4417 0.10 +0.1
53,036 + GFF4417 0.14 -0.0
53,036 + GFF4417 0.14 +0.6
53,037 - GFF4417 0.14 +0.7
53,037 - GFF4417 0.14 +0.5
53,054 + GFF4417 0.15 -0.1
53,054 + GFF4417 0.15 -0.6
53,054 + GFF4417 0.15 -0.8
53,054 + GFF4417 0.15 +0.0
53,054 + GFF4417 0.15 +0.3
53,054 + GFF4417 0.15 +0.2
53,054 + GFF4417 0.15 -0.0
53,055 - GFF4417 0.15 +0.6
53,055 - GFF4417 0.15 -0.1
53,055 - GFF4417 0.15 -0.0
53,055 - GFF4417 0.15 -0.4
53,055 - GFF4417 0.15 -0.0
53,099 + GFF4417 0.17 -0.8
53,099 + GFF4417 0.17 -1.3
53,099 + GFF4417 0.17 -0.2
53,099 + GFF4417 0.17 +0.1
53,099 + GFF4417 0.17 +0.4
53,099 + GFF4417 0.17 -0.6
53,099 + GFF4417 0.17 -0.2
53,099 + GFF4417 0.17 +0.7
53,099 + GFF4417 0.17 +1.0
53,099 + GFF4417 0.17 -0.7
53,099 + GFF4417 0.17 +0.1
53,100 - GFF4417 0.17 -2.0
53,100 - GFF4417 0.17 -1.4
53,100 - GFF4417 0.17 -0.8
53,100 - GFF4417 0.17 -0.0
53,100 - GFF4417 0.17 +0.7
53,100 - GFF4417 0.17 +0.7
53,100 - GFF4417 0.17 -1.1
53,100 - GFF4417 0.17 -0.2
53,100 - GFF4417 0.17 +0.2
53,100 - GFF4417 0.17 +0.3
53,100 - GFF4417 0.17 -0.0
53,100 - GFF4417 0.17 -1.0
53,100 - GFF4417 0.17 -0.1
53,100 - GFF4417 0.17 +0.4
53,100 - GFF4417 0.17 -0.3
53,100 - GFF4417 0.17 -0.1
53,100 - GFF4417 0.17 -0.0
53,100 - GFF4417 0.17 +0.5
53,175 + GFF4417 0.20 +0.2
53,175 + GFF4417 0.20 -0.2
53,175 + GFF4417 0.20 -0.7
53,175 + GFF4417 0.20 -0.4
53,175 + GFF4417 0.20 -0.7
53,175 + GFF4417 0.20 -0.3
53,175 + GFF4417 0.20 -0.2
53,175 + GFF4417 0.20 +0.2
53,175 + GFF4417 0.20 -1.5
53,175 + GFF4417 0.20 +1.0
53,176 - GFF4417 0.20 -0.3
53,176 - GFF4417 0.20 +0.6
53,176 - GFF4417 0.20 -0.8
53,176 - GFF4417 0.20 -0.8
53,176 - GFF4417 0.20 -0.3
53,176 - GFF4417 0.20 +0.2
53,176 - GFF4417 0.20 -0.5
53,176 - GFF4417 0.20 +0.0
53,176 - GFF4417 0.20 -1.2
53,176 - GFF4417 0.20 -0.4
53,176 - GFF4417 0.20 -0.3
53,176 - GFF4417 0.20 -0.6
53,237 + GFF4417 0.22 -1.1
53,237 + GFF4417 0.22 +0.1
53,237 + GFF4417 0.22 +0.0
53,237 + GFF4417 0.22 +0.6
53,238 - GFF4417 0.22 -1.8
53,238 - GFF4417 0.22 +0.7
53,238 - GFF4417 0.22 -0.2
53,238 - GFF4417 0.22 -0.7
53,238 - GFF4417 0.22 +0.2
53,238 - GFF4417 0.22 -0.5
53,238 - GFF4417 0.22 -0.7
53,267 + GFF4417 0.24 -0.1
53,458 + GFF4417 0.31 -0.1
53,458 + GFF4417 0.31 -1.0
53,458 + GFF4417 0.31 +0.6
53,459 - GFF4417 0.31 +0.0
53,459 - GFF4417 0.31 -0.2
53,556 + GFF4417 0.35 -0.9
53,557 - GFF4417 0.35 -0.5
53,557 - GFF4417 0.35 +0.7

Or see this region's nucleotide sequence