Strain Fitness in Variovorax sp. SCN45 around GFF441

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF440 and GFF441 overlap by 4 nucleotidesGFF441 and GFF442 overlap by 4 nucleotidesGFF442 and GFF443 overlap by 1 nucleotides GFF440 - CobN-like chelatase BtuS for metalloporphyrine salvage, at 477,183 to 481,196 GFF440 GFF441 - no description, at 481,193 to 481,546 GFF441 GFF442 - hypothetical transporter PduT for various metalloporphyrins, at 481,543 to 482,016 GFF442 GFF443 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 482,016 to 482,705 GFF443 Position (kb) 481 482Strain fitness (log2 ratio) -2 -1 0 1 2at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.235 kb on + strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.236 kb on - strand, within GFF440at 480.238 kb on + strand, within GFF440at 480.238 kb on + strand, within GFF440at 480.238 kb on + strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.239 kb on - strand, within GFF440at 480.466 kb on + strand, within GFF440at 480.467 kb on - strand, within GFF440at 480.476 kb on - strand, within GFF440at 480.476 kb on - strand, within GFF440at 480.476 kb on - strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.649 kb on + strand, within GFF440at 480.650 kb on - strand, within GFF440at 480.650 kb on - strand, within GFF440at 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.871 kb on + strandat 480.872 kb on - strandat 480.872 kb on - strandat 480.872 kb on - strandat 480.872 kb on - strandat 480.872 kb on - strandat 481.233 kb on + strand, within GFF441at 481.233 kb on + strand, within GFF441at 481.233 kb on + strand, within GFF441at 481.233 kb on + strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.234 kb on - strand, within GFF441at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.613 kb on + strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.614 kb on - strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.895 kb on + strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.896 kb on - strand, within GFF442at 481.922 kb on + strand, within GFF442at 481.922 kb on + strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 481.923 kb on - strand, within GFF442at 482.146 kb on + strand, within GFF443at 482.147 kb on - strand, within GFF443

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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480,235 + GFF440 0.76 +0.3
480,235 + GFF440 0.76 +0.1
480,235 + GFF440 0.76 +0.3
480,235 + GFF440 0.76 -0.1
480,235 + GFF440 0.76 -0.5
480,236 - GFF440 0.76 -0.2
480,236 - GFF440 0.76 +0.1
480,236 - GFF440 0.76 +1.4
480,236 - GFF440 0.76 -1.0
480,238 + GFF440 0.76 +0.4
480,238 + GFF440 0.76 +0.2
480,238 + GFF440 0.76 -1.8
480,239 - GFF440 0.76 -0.2
480,239 - GFF440 0.76 +1.2
480,239 - GFF440 0.76 +0.4
480,239 - GFF440 0.76 +0.9
480,239 - GFF440 0.76 -0.9
480,239 - GFF440 0.76 +0.2
480,239 - GFF440 0.76 -0.3
480,466 + GFF440 0.82 +0.2
480,467 - GFF440 0.82 +1.1
480,476 - GFF440 0.82 -0.2
480,476 - GFF440 0.82 -1.2
480,476 - GFF440 0.82 +0.1
480,649 + GFF440 0.86 +0.1
480,649 + GFF440 0.86 -0.3
480,649 + GFF440 0.86 -0.1
480,649 + GFF440 0.86 +0.3
480,649 + GFF440 0.86 -1.3
480,650 - GFF440 0.86 +0.6
480,650 - GFF440 0.86 -0.6
480,871 + -0.5
480,871 + -1.3
480,871 + -0.2
480,871 + -0.2
480,871 + +0.4
480,871 + -0.1
480,872 - +2.6
480,872 - -0.7
480,872 - -1.0
480,872 - -1.1
480,872 - -1.6
481,233 + GFF441 0.11 +0.2
481,233 + GFF441 0.11 -0.9
481,233 + GFF441 0.11 -0.2
481,233 + GFF441 0.11 +0.3
481,234 - GFF441 0.12 +0.1
481,234 - GFF441 0.12 +1.4
481,234 - GFF441 0.12 +0.2
481,234 - GFF441 0.12 +0.4
481,234 - GFF441 0.12 -0.0
481,613 + GFF442 0.15 -0.9
481,613 + GFF442 0.15 +0.2
481,613 + GFF442 0.15 +0.4
481,613 + GFF442 0.15 +0.3
481,613 + GFF442 0.15 -1.0
481,614 - GFF442 0.15 +0.3
481,614 - GFF442 0.15 +0.1
481,614 - GFF442 0.15 +0.0
481,614 - GFF442 0.15 -1.6
481,895 + GFF442 0.74 +0.4
481,895 + GFF442 0.74 +0.9
481,895 + GFF442 0.74 -1.5
481,895 + GFF442 0.74 +0.3
481,895 + GFF442 0.74 +0.0
481,895 + GFF442 0.74 -0.4
481,896 - GFF442 0.74 -0.2
481,896 - GFF442 0.74 -0.8
481,896 - GFF442 0.74 +0.1
481,896 - GFF442 0.74 -0.8
481,922 + GFF442 0.80 -0.2
481,922 + GFF442 0.80 -0.5
481,923 - GFF442 0.80 +0.4
481,923 - GFF442 0.80 -0.9
481,923 - GFF442 0.80 +0.7
481,923 - GFF442 0.80 +0.5
481,923 - GFF442 0.80 +0.1
481,923 - GFF442 0.80 +0.4
481,923 - GFF442 0.80 -0.1
481,923 - GFF442 0.80 +0.8
482,146 + GFF443 0.19 +2.1
482,147 - GFF443 0.19 -0.4

Or see this region's nucleotide sequence