Strain Fitness in Variovorax sp. SCN45 around GFF428

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF426 and GFF427 are separated by 122 nucleotidesGFF427 and GFF428 are separated by 77 nucleotidesGFF428 and GFF429 are separated by 15 nucleotides GFF426 - Cobyric acid synthase (EC 6.3.5.10), at 461,656 to 463,146 GFF426 GFF427 - no description, at 463,269 to 463,499 GFF427 GFF428 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 463,577 to 465,073 GFF428 GFF429 - RND efflux system, inner membrane transporter, at 465,089 to 468,358 GFF429 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2at 462.917 kb on + strand, within GFF426at 462.917 kb on + strand, within GFF426at 462.917 kb on + strand, within GFF426at 462.918 kb on - strand, within GFF426at 462.918 kb on - strand, within GFF426at 462.918 kb on - strand, within GFF426at 462.918 kb on - strand, within GFF426at 463.013 kb on + strandat 463.231 kb on + strandat 463.231 kb on + strandat 463.231 kb on + strandat 463.231 kb on + strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.232 kb on - strandat 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.294 kb on + strand, within GFF427at 463.295 kb on - strand, within GFF427at 463.295 kb on - strand, within GFF427at 463.381 kb on - strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.389 kb on + strand, within GFF427at 463.390 kb on - strand, within GFF427at 463.390 kb on - strand, within GFF427at 463.419 kb on + strand, within GFF427at 463.419 kb on + strand, within GFF427at 463.419 kb on + strand, within GFF427at 463.420 kb on - strand, within GFF427at 463.420 kb on - strand, within GFF427at 463.420 kb on - strand, within GFF427at 463.680 kb on + strandat 463.680 kb on + strandat 463.680 kb on + strandat 463.680 kb on + strandat 463.680 kb on + strandat 463.681 kb on - strandat 463.681 kb on - strandat 463.681 kb on - strandat 463.681 kb on - strandat 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.764 kb on + strand, within GFF428at 463.765 kb on - strand, within GFF428at 463.765 kb on - strand, within GFF428at 463.914 kb on + strand, within GFF428at 463.914 kb on + strand, within GFF428at 463.915 kb on - strand, within GFF428at 463.915 kb on - strand, within GFF428at 464.064 kb on + strand, within GFF428at 464.430 kb on + strand, within GFF428at 464.430 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.490 kb on + strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.491 kb on - strand, within GFF428at 464.604 kb on + strand, within GFF428at 464.613 kb on + strand, within GFF428at 464.613 kb on + strand, within GFF428at 465.261 kb on + strandat 465.261 kb on + strandat 465.261 kb on + strandat 465.261 kb on + strandat 465.261 kb on + strandat 465.261 kb on + strandat 465.261 kb on + strandat 465.262 kb on - strandat 465.262 kb on - strandat 465.262 kb on - strandat 465.262 kb on - strandat 465.650 kb on + strand, within GFF429at 465.650 kb on + strand, within GFF429at 465.650 kb on + strand, within GFF429at 465.650 kb on + strand, within GFF429at 465.651 kb on - strand, within GFF429at 465.651 kb on - strand, within GFF429at 465.651 kb on - strand, within GFF429at 465.651 kb on - strand, within GFF429at 465.651 kb on - strand, within GFF429at 465.660 kb on + strand, within GFF429at 465.660 kb on + strand, within GFF429at 465.661 kb on - strand, within GFF429at 465.661 kb on - strand, within GFF429at 465.661 kb on - strand, within GFF429at 465.744 kb on + strand, within GFF429at 465.744 kb on + strand, within GFF429at 465.744 kb on + strand, within GFF429at 465.745 kb on - strand, within GFF429at 465.745 kb on - strand, within GFF429at 465.745 kb on - strand, within GFF429at 465.745 kb on - strand, within GFF429at 465.745 kb on - strand, within GFF429at 465.835 kb on - strand, within GFF429at 465.873 kb on + strand, within GFF429at 465.873 kb on + strand, within GFF429at 465.882 kb on + strand, within GFF429at 465.882 kb on + strand, within GFF429at 465.882 kb on + strand, within GFF429at 465.882 kb on + strand, within GFF429at 465.883 kb on - strand, within GFF429at 465.883 kb on - strand, within GFF429at 465.883 kb on - strand, within GFF429at 465.883 kb on - strand, within GFF429at 465.883 kb on - strand, within GFF429at 466.002 kb on + strand, within GFF429at 466.032 kb on + strand, within GFF429at 466.032 kb on + strand, within GFF429at 466.032 kb on + strand, within GFF429at 466.032 kb on + strand, within GFF429at 466.033 kb on - strand, within GFF429at 466.033 kb on - strand, within GFF429at 466.033 kb on - strand, within GFF429at 466.033 kb on - strand, within GFF429at 466.065 kb on + strand, within GFF429at 466.065 kb on + strand, within GFF429at 466.066 kb on - strand, within GFF429at 466.066 kb on - strand, within GFF429

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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462,917 + GFF426 0.85 +0.1
462,917 + GFF426 0.85 -2.3
462,917 + GFF426 0.85 -0.6
462,918 - GFF426 0.85 +0.1
462,918 - GFF426 0.85 -0.1
462,918 - GFF426 0.85 +0.4
462,918 - GFF426 0.85 -0.2
463,013 + -0.4
463,231 + -0.5
463,231 + -0.5
463,231 + -1.2
463,231 + -0.3
463,232 - +0.2
463,232 - +0.5
463,232 - +0.5
463,232 - -1.1
463,232 - -1.4
463,232 - -0.2
463,294 + GFF427 0.11 -2.4
463,294 + GFF427 0.11 -0.6
463,294 + GFF427 0.11 +0.2
463,294 + GFF427 0.11 +1.7
463,294 + GFF427 0.11 +0.4
463,294 + GFF427 0.11 +0.6
463,294 + GFF427 0.11 -0.4
463,295 - GFF427 0.11 -0.6
463,295 - GFF427 0.11 -0.5
463,381 - GFF427 0.48 -0.4
463,389 + GFF427 0.52 +1.1
463,389 + GFF427 0.52 +2.4
463,389 + GFF427 0.52 +1.1
463,389 + GFF427 0.52 -0.5
463,390 - GFF427 0.52 -0.0
463,390 - GFF427 0.52 -1.0
463,419 + GFF427 0.65 -0.8
463,419 + GFF427 0.65 -0.9
463,419 + GFF427 0.65 -1.1
463,420 - GFF427 0.65 +0.7
463,420 - GFF427 0.65 -1.8
463,420 - GFF427 0.65 -0.0
463,680 + -1.0
463,680 + -0.7
463,680 + -1.1
463,680 + -0.9
463,680 + -1.2
463,681 - +0.1
463,681 - +0.7
463,681 - -0.6
463,681 - -0.9
463,764 + GFF428 0.12 +1.0
463,764 + GFF428 0.12 +0.5
463,764 + GFF428 0.12 -0.7
463,764 + GFF428 0.12 -0.0
463,764 + GFF428 0.12 +0.3
463,764 + GFF428 0.12 -0.0
463,765 - GFF428 0.13 +0.2
463,765 - GFF428 0.13 +2.4
463,914 + GFF428 0.23 -0.3
463,914 + GFF428 0.23 -0.4
463,915 - GFF428 0.23 -0.1
463,915 - GFF428 0.23 +0.2
464,064 + GFF428 0.33 +0.2
464,430 + GFF428 0.57 +1.1
464,430 + GFF428 0.57 -0.9
464,490 + GFF428 0.61 +0.3
464,490 + GFF428 0.61 -1.0
464,490 + GFF428 0.61 +0.4
464,490 + GFF428 0.61 -0.3
464,490 + GFF428 0.61 +0.3
464,490 + GFF428 0.61 -0.4
464,491 - GFF428 0.61 +0.1
464,491 - GFF428 0.61 +0.2
464,491 - GFF428 0.61 -0.3
464,491 - GFF428 0.61 -0.6
464,604 + GFF428 0.69 -0.3
464,613 + GFF428 0.69 +0.3
464,613 + GFF428 0.69 -0.5
465,261 + +0.7
465,261 + +1.8
465,261 + +0.0
465,261 + -0.0
465,261 + -1.4
465,261 + +0.8
465,261 + -0.1
465,262 - -0.1
465,262 - +0.0
465,262 - -0.5
465,262 - -0.3
465,650 + GFF429 0.17 +0.3
465,650 + GFF429 0.17 -0.2
465,650 + GFF429 0.17 -0.9
465,650 + GFF429 0.17 -0.1
465,651 - GFF429 0.17 -0.4
465,651 - GFF429 0.17 -0.9
465,651 - GFF429 0.17 +0.5
465,651 - GFF429 0.17 -1.4
465,651 - GFF429 0.17 +0.1
465,660 + GFF429 0.17 -0.8
465,660 + GFF429 0.17 -1.1
465,661 - GFF429 0.17 +0.9
465,661 - GFF429 0.17 +0.5
465,661 - GFF429 0.17 -0.2
465,744 + GFF429 0.20 -0.7
465,744 + GFF429 0.20 -1.9
465,744 + GFF429 0.20 -1.4
465,745 - GFF429 0.20 +1.4
465,745 - GFF429 0.20 +0.2
465,745 - GFF429 0.20 +0.4
465,745 - GFF429 0.20 -0.6
465,745 - GFF429 0.20 -0.1
465,835 - GFF429 0.23 -1.0
465,873 + GFF429 0.24 -1.1
465,873 + GFF429 0.24 +0.1
465,882 + GFF429 0.24 -1.9
465,882 + GFF429 0.24 +0.1
465,882 + GFF429 0.24 -0.8
465,882 + GFF429 0.24 -2.0
465,883 - GFF429 0.24 +0.7
465,883 - GFF429 0.24 +1.0
465,883 - GFF429 0.24 +1.0
465,883 - GFF429 0.24 -0.1
465,883 - GFF429 0.24 -1.2
466,002 + GFF429 0.28 -0.6
466,032 + GFF429 0.29 -0.5
466,032 + GFF429 0.29 +0.2
466,032 + GFF429 0.29 -0.2
466,032 + GFF429 0.29 +0.4
466,033 - GFF429 0.29 -0.3
466,033 - GFF429 0.29 -0.0
466,033 - GFF429 0.29 +0.0
466,033 - GFF429 0.29 -0.8
466,065 + GFF429 0.30 -0.3
466,065 + GFF429 0.30 +0.5
466,066 - GFF429 0.30 -0.6
466,066 - GFF429 0.30 -0.3

Or see this region's nucleotide sequence