Strain Fitness in Variovorax sp. SCN45 around GFF4279

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4277 and GFF4278 are separated by 30 nucleotidesGFF4278 and GFF4279 are separated by 2 nucleotidesGFF4279 and GFF4280 are separated by 34 nucleotides GFF4277 - Small subunit naph/bph dioxygenase, at 197,023 to 197,607 GFF4277 GFF4278 - Putative short-chain dehydrogenase, at 197,638 to 198,438 GFF4278 GFF4279 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 198,441 to 199,808 GFF4279 GFF4280 - oxidoreductase FAD/NAD(P)-binding domain protein, at 199,843 to 200,838 GFF4280 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1at 197.544 kb on - strand, within GFF4277at 197.621 kb on - strandat 197.902 kb on + strand, within GFF4278at 197.972 kb on + strand, within GFF4278at 197.973 kb on - strand, within GFF4278at 197.973 kb on - strand, within GFF4278at 197.973 kb on - strand, within GFF4278at 198.077 kb on + strand, within GFF4278at 198.077 kb on + strand, within GFF4278at 198.077 kb on + strand, within GFF4278at 198.077 kb on + strand, within GFF4278at 198.077 kb on + strand, within GFF4278at 198.078 kb on - strand, within GFF4278at 198.078 kb on - strand, within GFF4278at 198.078 kb on - strand, within GFF4278at 198.511 kb on + strandat 198.512 kb on - strandat 198.512 kb on - strandat 198.529 kb on + strandat 198.529 kb on + strandat 198.619 kb on + strand, within GFF4279at 198.619 kb on + strand, within GFF4279at 198.620 kb on - strand, within GFF4279at 198.626 kb on - strand, within GFF4279at 198.670 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.730 kb on + strand, within GFF4279at 198.731 kb on - strand, within GFF4279at 198.731 kb on - strand, within GFF4279at 198.731 kb on - strand, within GFF4279at 198.731 kb on - strand, within GFF4279at 198.733 kb on + strand, within GFF4279at 198.733 kb on + strand, within GFF4279at 198.733 kb on + strand, within GFF4279at 198.734 kb on - strand, within GFF4279at 198.734 kb on - strand, within GFF4279at 198.734 kb on - strand, within GFF4279at 198.734 kb on - strand, within GFF4279at 198.955 kb on + strand, within GFF4279at 198.955 kb on + strand, within GFF4279at 198.956 kb on - strand, within GFF4279at 198.982 kb on + strand, within GFF4279at 198.983 kb on - strand, within GFF4279at 199.162 kb on + strand, within GFF4279at 199.162 kb on + strand, within GFF4279at 199.163 kb on - strand, within GFF4279at 199.163 kb on - strand, within GFF4279at 199.163 kb on - strand, within GFF4279at 199.309 kb on + strand, within GFF4279at 199.310 kb on - strand, within GFF4279at 199.363 kb on + strand, within GFF4279at 199.363 kb on + strand, within GFF4279at 199.363 kb on + strand, within GFF4279at 199.363 kb on + strand, within GFF4279at 199.364 kb on - strand, within GFF4279at 199.471 kb on + strand, within GFF4279at 199.471 kb on + strand, within GFF4279at 199.472 kb on - strand, within GFF4279at 199.472 kb on - strand, within GFF4279at 199.522 kb on + strand, within GFF4279at 199.523 kb on - strand, within GFF4279at 199.534 kb on + strand, within GFF4279at 199.780 kb on + strandat 199.991 kb on + strand, within GFF4280at 199.991 kb on + strand, within GFF4280at 199.991 kb on + strand, within GFF4280at 199.992 kb on - strand, within GFF4280at 200.389 kb on - strand, within GFF4280at 200.417 kb on + strand, within GFF4280at 200.649 kb on - strand, within GFF4280

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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197,544 - GFF4277 0.89 -1.8
197,621 - -0.2
197,902 + GFF4278 0.33 -0.0
197,972 + GFF4278 0.42 -0.1
197,973 - GFF4278 0.42 -1.0
197,973 - GFF4278 0.42 -0.5
197,973 - GFF4278 0.42 +0.1
198,077 + GFF4278 0.55 -1.7
198,077 + GFF4278 0.55 +0.4
198,077 + GFF4278 0.55 -0.8
198,077 + GFF4278 0.55 +0.1
198,077 + GFF4278 0.55 +1.4
198,078 - GFF4278 0.55 -1.0
198,078 - GFF4278 0.55 +0.4
198,078 - GFF4278 0.55 -0.8
198,511 + +0.1
198,512 - -0.4
198,512 - +0.8
198,529 + -1.5
198,529 + -2.5
198,619 + GFF4279 0.13 +0.0
198,619 + GFF4279 0.13 +1.1
198,620 - GFF4279 0.13 +0.2
198,626 - GFF4279 0.14 -0.6
198,670 + GFF4279 0.17 +1.4
198,730 + GFF4279 0.21 -0.7
198,730 + GFF4279 0.21 -0.8
198,730 + GFF4279 0.21 -1.3
198,730 + GFF4279 0.21 -1.1
198,730 + GFF4279 0.21 -0.4
198,730 + GFF4279 0.21 -0.4
198,730 + GFF4279 0.21 +0.2
198,730 + GFF4279 0.21 -0.5
198,731 - GFF4279 0.21 +0.3
198,731 - GFF4279 0.21 -0.8
198,731 - GFF4279 0.21 -2.1
198,731 - GFF4279 0.21 -0.7
198,733 + GFF4279 0.21 -0.9
198,733 + GFF4279 0.21 +0.8
198,733 + GFF4279 0.21 -0.0
198,734 - GFF4279 0.21 -0.5
198,734 - GFF4279 0.21 -0.5
198,734 - GFF4279 0.21 +0.4
198,734 - GFF4279 0.21 -0.0
198,955 + GFF4279 0.38 +0.0
198,955 + GFF4279 0.38 +1.2
198,956 - GFF4279 0.38 -0.2
198,982 + GFF4279 0.40 +0.9
198,983 - GFF4279 0.40 -0.2
199,162 + GFF4279 0.53 -1.8
199,162 + GFF4279 0.53 +0.1
199,163 - GFF4279 0.53 -1.6
199,163 - GFF4279 0.53 -1.0
199,163 - GFF4279 0.53 +0.1
199,309 + GFF4279 0.63 +0.2
199,310 - GFF4279 0.64 -0.6
199,363 + GFF4279 0.67 -0.4
199,363 + GFF4279 0.67 -2.2
199,363 + GFF4279 0.67 -0.1
199,363 + GFF4279 0.67 -1.9
199,364 - GFF4279 0.67 -0.8
199,471 + GFF4279 0.75 -0.8
199,471 + GFF4279 0.75 -0.3
199,472 - GFF4279 0.75 -0.5
199,472 - GFF4279 0.75 -0.3
199,522 + GFF4279 0.79 -0.8
199,523 - GFF4279 0.79 -0.1
199,534 + GFF4279 0.80 -0.4
199,780 + -0.4
199,991 + GFF4280 0.15 +0.1
199,991 + GFF4280 0.15 -1.9
199,991 + GFF4280 0.15 +0.4
199,992 - GFF4280 0.15 +0.2
200,389 - GFF4280 0.55 +0.2
200,417 + GFF4280 0.58 -0.2
200,649 - GFF4280 0.81 -0.8

Or see this region's nucleotide sequence