Strain Fitness in Variovorax sp. SCN45 around GFF420

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF418 and GFF419 are separated by 30 nucleotidesGFF419 and GFF420 are separated by 27 nucleotidesGFF420 and GFF422 are separated by 10 nucleotidesGFF422 and GFF421 overlap by 9 nucleotides GFF418 - Endonuclease III (EC 4.2.99.18), at 453,185 to 453,832 GFF418 GFF419 - hypothetical protein, at 453,863 to 454,711 GFF419 GFF420 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 454,739 to 456,301 GFF420 GFF422 - no description, at 456,312 to 456,452 GFF422 GFF421 - hypothetical protein, at 456,444 to 459,227 GFF421 Position (kb) 454 455 456 457Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 453.797 kb on + strandat 453.797 kb on + strandat 453.797 kb on + strandat 453.798 kb on - strandat 453.798 kb on - strandat 453.798 kb on - strandat 453.798 kb on - strandat 453.986 kb on + strand, within GFF419at 454.202 kb on + strand, within GFF419at 454.517 kb on + strand, within GFF419at 454.517 kb on + strand, within GFF419at 454.518 kb on - strand, within GFF419at 454.518 kb on - strand, within GFF419at 454.518 kb on - strand, within GFF419at 454.553 kb on + strand, within GFF419at 454.553 kb on + strand, within GFF419at 454.553 kb on + strand, within GFF419at 454.554 kb on - strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 455.730 kb on + strand, within GFF420at 455.910 kb on + strand, within GFF420at 455.910 kb on + strand, within GFF420at 455.910 kb on + strand, within GFF420at 455.910 kb on + strand, within GFF420at 455.910 kb on + strand, within GFF420at 455.910 kb on + strand, within GFF420at 455.911 kb on - strand, within GFF420at 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.303 kb on + strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.304 kb on - strandat 456.400 kb on + strand, within GFF422at 456.400 kb on + strand, within GFF422at 456.400 kb on + strand, within GFF422at 456.400 kb on + strand, within GFF422at 456.400 kb on + strand, within GFF422at 456.400 kb on + strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.401 kb on - strand, within GFF422at 456.771 kb on + strand, within GFF421at 456.772 kb on - strand, within GFF421at 456.772 kb on - strand, within GFF421at 456.772 kb on - strand, within GFF421at 456.906 kb on + strand, within GFF421at 457.044 kb on + strand, within GFF421at 457.044 kb on + strand, within GFF421at 457.045 kb on - strand, within GFF421at 457.045 kb on - strand, within GFF421at 457.045 kb on - strand, within GFF421at 457.045 kb on - strand, within GFF421at 457.218 kb on + strand, within GFF421at 457.218 kb on + strand, within GFF421at 457.218 kb on + strand, within GFF421at 457.218 kb on + strand, within GFF421at 457.219 kb on - strand, within GFF421at 457.219 kb on - strand, within GFF421at 457.219 kb on - strand, within GFF421

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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453,797 + -0.0
453,797 + +0.4
453,797 + +0.0
453,798 - +0.9
453,798 - -0.5
453,798 - -0.3
453,798 - -0.4
453,986 + GFF419 0.14 -0.9
454,202 + GFF419 0.40 +0.5
454,517 + GFF419 0.77 -1.2
454,517 + GFF419 0.77 +0.1
454,518 - GFF419 0.77 -0.0
454,518 - GFF419 0.77 -0.6
454,518 - GFF419 0.77 +0.1
454,553 + GFF419 0.81 -0.6
454,553 + GFF419 0.81 +0.2
454,553 + GFF419 0.81 -1.6
454,554 - GFF419 0.81 +0.2
454,577 + GFF419 0.84 -0.7
454,577 + GFF419 0.84 +0.2
454,577 + GFF419 0.84 +0.6
454,577 + GFF419 0.84 +0.2
454,577 + GFF419 0.84 -1.0
454,578 - GFF419 0.84 +0.4
454,578 - GFF419 0.84 +2.4
454,578 - GFF419 0.84 -0.1
454,578 - GFF419 0.84 +0.2
454,601 + GFF419 0.87 -0.2
454,601 + GFF419 0.87 -1.7
454,601 + GFF419 0.87 -0.5
454,601 + GFF419 0.87 +4.0
454,601 + GFF419 0.87 +1.1
454,601 + GFF419 0.87 -0.0
454,601 + GFF419 0.87 -0.2
454,602 - GFF419 0.87 -0.0
454,602 - GFF419 0.87 +0.2
454,602 - GFF419 0.87 -0.9
454,602 - GFF419 0.87 +0.2
454,602 - GFF419 0.87 +0.4
454,602 - GFF419 0.87 +1.0
454,602 - GFF419 0.87 -0.7
454,602 - GFF419 0.87 -0.7
454,602 - GFF419 0.87 -0.5
455,730 + GFF420 0.63 +1.0
455,910 + GFF420 0.75 -0.5
455,910 + GFF420 0.75 +1.8
455,910 + GFF420 0.75 +0.3
455,910 + GFF420 0.75 +1.6
455,910 + GFF420 0.75 +0.1
455,910 + GFF420 0.75 +0.1
455,911 - GFF420 0.75 -0.3
456,303 + +0.6
456,303 + -1.2
456,303 + -0.9
456,303 + -1.6
456,303 + +0.1
456,303 + +0.4
456,303 + +0.3
456,303 + +0.0
456,303 + +0.3
456,303 + +0.2
456,303 + +2.1
456,303 + +0.3
456,303 + -0.5
456,303 + -0.1
456,303 + -0.3
456,303 + +0.9
456,303 + -0.3
456,303 + +0.5
456,303 + -0.1
456,303 + +0.7
456,304 - +1.0
456,304 - -0.5
456,304 - +0.4
456,304 - +0.4
456,304 - +0.6
456,304 - -0.1
456,304 - -0.3
456,304 - -0.0
456,304 - -0.7
456,304 - -0.1
456,304 - -0.9
456,304 - -0.2
456,304 - -1.3
456,400 + GFF422 0.62 -0.0
456,400 + GFF422 0.62 -0.4
456,400 + GFF422 0.62 -0.6
456,400 + GFF422 0.62 -0.3
456,400 + GFF422 0.62 -0.2
456,400 + GFF422 0.62 -0.1
456,401 - GFF422 0.63 +0.3
456,401 - GFF422 0.63 -0.4
456,401 - GFF422 0.63 -0.8
456,401 - GFF422 0.63 +1.0
456,401 - GFF422 0.63 -1.6
456,401 - GFF422 0.63 +0.1
456,401 - GFF422 0.63 -0.3
456,401 - GFF422 0.63 +0.8
456,401 - GFF422 0.63 +0.2
456,401 - GFF422 0.63 +0.9
456,401 - GFF422 0.63 -0.7
456,771 + GFF421 0.12 -0.3
456,772 - GFF421 0.12 -0.7
456,772 - GFF421 0.12 +0.2
456,772 - GFF421 0.12 -1.8
456,906 + GFF421 0.17 -0.0
457,044 + GFF421 0.22 -1.3
457,044 + GFF421 0.22 -1.4
457,045 - GFF421 0.22 -1.1
457,045 - GFF421 0.22 +0.3
457,045 - GFF421 0.22 +0.2
457,045 - GFF421 0.22 -0.0
457,218 + GFF421 0.28 -0.3
457,218 + GFF421 0.28 -0.9
457,218 + GFF421 0.28 +0.6
457,218 + GFF421 0.28 +0.8
457,219 - GFF421 0.28 -0.8
457,219 - GFF421 0.28 +0.4
457,219 - GFF421 0.28 -0.8

Or see this region's nucleotide sequence