Strain Fitness in Variovorax sp. SCN45 around GFF4195

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
109,346	-		GFF4194	0.26	-0.7
109,375	+		GFF4194	0.28	-0.8
109,411	+		GFF4194	0.31	-0.3
109,412	-		GFF4194	0.31	-1.0
109,574	-		GFF4194	0.44	-0.2
109,678	+		GFF4194	0.53	-0.2
110,498	+		GFF4195	0.23	+0.7
110,615	+		GFF4195	0.36	+0.3
110,615	+		GFF4195	0.36	-0.4
110,616	-		GFF4195	0.36	+0.2
110,706	+		GFF4195	0.45	+1.2
110,707	-		GFF4195	0.45	-0.4
110,844	-		GFF4195	0.59	-1.4
110,939	+		GFF4195	0.69	+0.2
110,939	+		GFF4195	0.69	-0.4
110,939	+		GFF4195	0.69	-0.3
111,017	+		GFF4195	0.78	+0.3
111,018	-		GFF4195	0.78	-0.4
111,277	+				-1.0
111,277	+				-0.2
111,277	+				+0.3
111,278	-				-0.4
111,594	-		GFF4196	0.25	+0.8
111,859	-		GFF4196	0.55	-0.8
112,086	+		GFF4196	0.81	-1.1
112,086	+		GFF4196	0.81	-0.7
112,131	+		GFF4196	0.86	+1.8
112,132	-		GFF4196	0.86	-0.4
112,132	-		GFF4196	0.86	-0.5
112,132	-		GFF4196	0.86	+0.4