Strain Fitness in Variovorax sp. SCN45 around GFF4170

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4168 and GFF4169 overlap by 4 nucleotidesGFF4169 and GFF4170 are separated by 19 nucleotidesGFF4170 and GFF4171 are separated by 34 nucleotides GFF4168 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 73,122 to 73,937 GFF4168 GFF4169 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 73,934 to 74,878 GFF4169 GFF4170 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 74,898 to 76,454 GFF4170 GFF4171 - hypothetical protein, at 76,489 to 77,337 GFF4171 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 73.968 kb on + strandat 74.001 kb on + strandat 74.235 kb on + strand, within GFF4169at 74.236 kb on - strand, within GFF4169at 74.236 kb on - strand, within GFF4169at 74.244 kb on + strand, within GFF4169at 74.244 kb on + strand, within GFF4169at 74.245 kb on - strand, within GFF4169at 74.245 kb on - strand, within GFF4169at 74.245 kb on - strand, within GFF4169at 74.245 kb on - strand, within GFF4169at 74.340 kb on + strand, within GFF4169at 74.340 kb on + strand, within GFF4169at 74.340 kb on + strand, within GFF4169at 74.340 kb on + strand, within GFF4169at 74.340 kb on + strand, within GFF4169at 74.340 kb on + strand, within GFF4169at 74.341 kb on - strand, within GFF4169at 74.341 kb on - strand, within GFF4169at 74.341 kb on - strand, within GFF4169at 74.421 kb on + strand, within GFF4169at 74.422 kb on - strand, within GFF4169at 74.422 kb on - strand, within GFF4169at 74.422 kb on - strand, within GFF4169at 74.995 kb on + strandat 74.995 kb on + strandat 74.996 kb on - strandat 75.049 kb on - strandat 75.166 kb on + strand, within GFF4170at 75.166 kb on + strand, within GFF4170at 75.167 kb on - strand, within GFF4170at 75.167 kb on - strand, within GFF4170at 75.217 kb on + strand, within GFF4170at 75.217 kb on + strand, within GFF4170at 75.218 kb on - strand, within GFF4170at 75.218 kb on - strand, within GFF4170at 75.233 kb on - strand, within GFF4170at 75.380 kb on - strand, within GFF4170at 75.454 kb on + strand, within GFF4170at 75.455 kb on - strand, within GFF4170at 75.529 kb on + strand, within GFF4170at 76.114 kb on + strand, within GFF4170at 76.114 kb on + strand, within GFF4170at 76.115 kb on - strand, within GFF4170at 76.198 kb on + strand, within GFF4170at 76.198 kb on + strand, within GFF4170at 76.199 kb on - strand, within GFF4170at 76.199 kb on - strand, within GFF4170at 76.199 kb on - strand, within GFF4170at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.063 kb on + strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.064 kb on - strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.069 kb on + strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.070 kb on - strand, within GFF4171at 77.126 kb on - strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.252 kb on + strand, within GFF4171at 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.253 kb on - strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.261 kb on + strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.262 kb on - strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.291 kb on + strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.292 kb on - strandat 77.386 kb on + strandat 77.392 kb on + strandat 77.392 kb on + strandat 77.451 kb on + strandat 77.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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73,968 + +0.3
74,001 + -0.4
74,235 + GFF4169 0.32 -0.5
74,236 - GFF4169 0.32 -0.2
74,236 - GFF4169 0.32 -1.5
74,244 + GFF4169 0.33 +1.2
74,244 + GFF4169 0.33 -0.2
74,245 - GFF4169 0.33 +0.4
74,245 - GFF4169 0.33 -0.0
74,245 - GFF4169 0.33 +0.5
74,245 - GFF4169 0.33 -0.1
74,340 + GFF4169 0.43 -0.2
74,340 + GFF4169 0.43 +0.8
74,340 + GFF4169 0.43 -0.5
74,340 + GFF4169 0.43 -0.4
74,340 + GFF4169 0.43 +0.0
74,340 + GFF4169 0.43 +0.3
74,341 - GFF4169 0.43 +0.8
74,341 - GFF4169 0.43 +0.2
74,341 - GFF4169 0.43 +0.1
74,421 + GFF4169 0.52 +0.2
74,422 - GFF4169 0.52 -1.3
74,422 - GFF4169 0.52 -0.0
74,422 - GFF4169 0.52 -0.1
74,995 + -1.8
74,995 + -0.6
74,996 - -0.1
75,049 - -1.7
75,166 + GFF4170 0.17 -1.5
75,166 + GFF4170 0.17 +0.6
75,167 - GFF4170 0.17 -0.2
75,167 - GFF4170 0.17 -0.1
75,217 + GFF4170 0.20 -0.0
75,217 + GFF4170 0.20 -0.4
75,218 - GFF4170 0.21 -0.4
75,218 - GFF4170 0.21 -0.0
75,233 - GFF4170 0.22 +1.7
75,380 - GFF4170 0.31 +1.0
75,454 + GFF4170 0.36 -0.4
75,455 - GFF4170 0.36 -0.1
75,529 + GFF4170 0.41 +0.2
76,114 + GFF4170 0.78 -0.1
76,114 + GFF4170 0.78 -0.1
76,115 - GFF4170 0.78 +0.2
76,198 + GFF4170 0.83 -0.2
76,198 + GFF4170 0.83 +1.8
76,199 - GFF4170 0.84 -1.5
76,199 - GFF4170 0.84 -1.1
76,199 - GFF4170 0.84 -0.5
77,063 + GFF4171 0.68 +0.5
77,063 + GFF4171 0.68 +0.1
77,063 + GFF4171 0.68 -0.0
77,063 + GFF4171 0.68 +0.9
77,063 + GFF4171 0.68 -0.8
77,064 - GFF4171 0.68 -0.5
77,064 - GFF4171 0.68 +0.1
77,064 - GFF4171 0.68 -0.1
77,064 - GFF4171 0.68 -0.3
77,064 - GFF4171 0.68 +0.4
77,064 - GFF4171 0.68 -0.5
77,069 + GFF4171 0.68 +0.1
77,069 + GFF4171 0.68 +1.8
77,069 + GFF4171 0.68 -1.0
77,069 + GFF4171 0.68 -1.8
77,069 + GFF4171 0.68 -0.2
77,069 + GFF4171 0.68 +0.3
77,070 - GFF4171 0.68 -1.1
77,070 - GFF4171 0.68 -0.8
77,070 - GFF4171 0.68 +0.1
77,070 - GFF4171 0.68 +1.8
77,126 - GFF4171 0.75 +0.5
77,252 + GFF4171 0.90 -0.2
77,252 + GFF4171 0.90 -0.3
77,252 + GFF4171 0.90 -1.0
77,252 + GFF4171 0.90 -1.2
77,252 + GFF4171 0.90 -0.8
77,252 + GFF4171 0.90 -0.2
77,252 + GFF4171 0.90 +0.3
77,252 + GFF4171 0.90 -0.6
77,252 + GFF4171 0.90 -0.1
77,252 + GFF4171 0.90 -0.5
77,252 + GFF4171 0.90 -0.5
77,253 - +0.3
77,253 - -0.0
77,253 - -1.7
77,253 - +1.2
77,253 - +1.4
77,261 + -0.2
77,261 + -0.0
77,261 + -0.2
77,261 + +0.1
77,262 - -0.3
77,262 - -0.4
77,262 - -1.5
77,262 - -0.8
77,262 - -0.2
77,291 + -0.5
77,291 + -0.4
77,291 + +0.2
77,291 + -0.7
77,291 + -0.7
77,292 - -0.3
77,292 - -0.7
77,292 - +0.2
77,292 - -0.5
77,292 - -1.5
77,292 - +1.0
77,386 + -0.5
77,392 + -0.6
77,392 + +0.8
77,451 + -0.5
77,451 + -0.1

Or see this region's nucleotide sequence