Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4064 and GFF4065 are separated by 138 nucleotides GFF4065 and GFF4066 are separated by 78 nucleotides GFF4066 and GFF4067 are separated by 186 nucleotides
GFF4064 - no description, at 279,002 to 279,340
GFF4064
GFF4065 - Uncharacterized cysteine-rich DUF326 protein bsYhjQ/STM1261, at 279,479 to 279,808
GFF4065
GFF4066 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 279,887 to 281,173
GFF4066
GFF4067 - FIG00897050: hypothetical protein, at 281,360 to 283,003
GFF4067
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -1
0
1 at 278.913 kb on - strand at 278.917 kb on + strand at 278.917 kb on + strand at 278.918 kb on - strand at 278.918 kb on - strand at 278.918 kb on - strand at 278.943 kb on - strand at 278.943 kb on - strand at 278.964 kb on - strand at 279.056 kb on + strand, within GFF4064 at 279.338 kb on + strand at 279.494 kb on + strand at 279.494 kb on + strand at 279.495 kb on - strand at 279.495 kb on - strand at 279.495 kb on - strand at 279.497 kb on - strand at 279.582 kb on - strand, within GFF4065 at 279.678 kb on + strand, within GFF4065 at 279.678 kb on + strand, within GFF4065 at 279.678 kb on + strand, within GFF4065 at 279.678 kb on + strand, within GFF4065 at 279.679 kb on - strand, within GFF4065 at 279.679 kb on - strand, within GFF4065 at 279.679 kb on - strand, within GFF4065 at 279.679 kb on - strand, within GFF4065 at 279.679 kb on - strand, within GFF4065 at 279.679 kb on - strand, within GFF4065 at 279.826 kb on + strand at 279.897 kb on + strand at 279.897 kb on + strand at 279.973 kb on - strand at 279.981 kb on + strand at 280.064 kb on + strand, within GFF4066 at 280.137 kb on + strand, within GFF4066 at 280.137 kb on + strand, within GFF4066 at 280.138 kb on - strand, within GFF4066 at 280.138 kb on - strand, within GFF4066 at 280.294 kb on - strand, within GFF4066 at 280.294 kb on - strand, within GFF4066 at 280.294 kb on - strand, within GFF4066 at 280.621 kb on - strand, within GFF4066 at 280.668 kb on + strand, within GFF4066 at 280.668 kb on + strand, within GFF4066 at 280.668 kb on + strand, within GFF4066 at 280.722 kb on + strand, within GFF4066 at 280.723 kb on - strand, within GFF4066 at 280.723 kb on - strand, within GFF4066 at 280.869 kb on + strand, within GFF4066 at 280.869 kb on + strand, within GFF4066 at 280.870 kb on - strand, within GFF4066 at 281.091 kb on + strand at 281.091 kb on + strand at 281.091 kb on + strand at 281.091 kb on + strand at 281.091 kb on + strand at 281.091 kb on + strand at 281.091 kb on + strand at 281.092 kb on - strand at 281.092 kb on - strand at 281.092 kb on - strand at 281.263 kb on - strand at 281.275 kb on - strand at 281.303 kb on - strand at 281.303 kb on - strand at 281.390 kb on - strand at 281.522 kb on + strand at 281.522 kb on + strand at 281.523 kb on - strand at 281.523 kb on - strand at 281.523 kb on - strand at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.549 kb on + strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.550 kb on - strand, within GFF4067 at 281.628 kb on - strand, within GFF4067 at 281.628 kb on - strand, within GFF4067 at 281.673 kb on - strand, within GFF4067 at 281.673 kb on - strand, within GFF4067 at 281.673 kb on - strand, within GFF4067 at 281.786 kb on + strand, within GFF4067 at 281.786 kb on + strand, within GFF4067 at 281.786 kb on + strand, within GFF4067 at 281.786 kb on + strand, within GFF4067 at 281.787 kb on - strand, within GFF4067 at 281.787 kb on - strand, within GFF4067 at 281.787 kb on - strand, within GFF4067 at 281.927 kb on + strand, within GFF4067 at 282.083 kb on + strand, within GFF4067 at 282.143 kb on + strand, within GFF4067 at 282.143 kb on + strand, within GFF4067 at 282.144 kb on - strand, within GFF4067 at 282.144 kb on - strand, within GFF4067
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 278,913 - -0.3 278,917 + -0.4 278,917 + +0.4 278,918 - -1.0 278,918 - -0.2 278,918 - +0.2 278,943 - -0.6 278,943 - +0.7 278,964 - -0.6 279,056 + GFF4064 0.16 -0.5 279,338 + +0.3 279,494 + -0.3 279,494 + +0.7 279,495 - +0.1 279,495 - +0.4 279,495 - -1.6 279,497 - -0.6 279,582 - GFF4065 0.31 +0.8 279,678 + GFF4065 0.60 -0.5 279,678 + GFF4065 0.60 +0.1 279,678 + GFF4065 0.60 -0.9 279,678 + GFF4065 0.60 -1.7 279,679 - GFF4065 0.61 -0.9 279,679 - GFF4065 0.61 -0.1 279,679 - GFF4065 0.61 +1.4 279,679 - GFF4065 0.61 -0.6 279,679 - GFF4065 0.61 -0.7 279,679 - GFF4065 0.61 +1.3 279,826 + -1.4 279,897 + +0.0 279,897 + -0.6 279,973 - +1.7 279,981 + -1.1 280,064 + GFF4066 0.14 +0.6 280,137 + GFF4066 0.19 +0.5 280,137 + GFF4066 0.19 +1.4 280,138 - GFF4066 0.20 +0.5 280,138 - GFF4066 0.20 +0.1 280,294 - GFF4066 0.32 +0.1 280,294 - GFF4066 0.32 -0.1 280,294 - GFF4066 0.32 -0.7 280,621 - GFF4066 0.57 -0.7 280,668 + GFF4066 0.61 -0.0 280,668 + GFF4066 0.61 +0.6 280,668 + GFF4066 0.61 -0.2 280,722 + GFF4066 0.65 +0.3 280,723 - GFF4066 0.65 +0.0 280,723 - GFF4066 0.65 -1.0 280,869 + GFF4066 0.76 -0.7 280,869 + GFF4066 0.76 -0.3 280,870 - GFF4066 0.76 +0.1 281,091 + +0.5 281,091 + -1.0 281,091 + +0.7 281,091 + -0.2 281,091 + -0.2 281,091 + -0.2 281,091 + +1.1 281,092 - -0.3 281,092 - -0.3 281,092 - +0.3 281,263 - +1.4 281,275 - -1.5 281,303 - +0.3 281,303 - -0.3 281,390 - -0.3 281,522 + +1.0 281,522 + +0.6 281,523 - -1.7 281,523 - -0.3 281,523 - -0.7 281,549 + GFF4067 0.11 -0.3 281,549 + GFF4067 0.11 +1.3 281,549 + GFF4067 0.11 +0.5 281,549 + GFF4067 0.11 +0.1 281,549 + GFF4067 0.11 -0.4 281,549 + GFF4067 0.11 +0.5 281,549 + GFF4067 0.11 -0.6 281,549 + GFF4067 0.11 -0.7 281,549 + GFF4067 0.11 +0.4 281,549 + GFF4067 0.11 -1.3 281,549 + GFF4067 0.11 -1.2 281,549 + GFF4067 0.11 -0.2 281,549 + GFF4067 0.11 -0.3 281,550 - GFF4067 0.12 -0.4 281,550 - GFF4067 0.12 -0.3 281,550 - GFF4067 0.12 +0.2 281,550 - GFF4067 0.12 +0.1 281,550 - GFF4067 0.12 -0.1 281,550 - GFF4067 0.12 -0.1 281,550 - GFF4067 0.12 -0.5 281,550 - GFF4067 0.12 -0.7 281,550 - GFF4067 0.12 +0.8 281,628 - GFF4067 0.16 -0.6 281,628 - GFF4067 0.16 -0.7 281,673 - GFF4067 0.19 +0.0 281,673 - GFF4067 0.19 -0.7 281,673 - GFF4067 0.19 -0.2 281,786 + GFF4067 0.26 -0.2 281,786 + GFF4067 0.26 -1.1 281,786 + GFF4067 0.26 -0.4 281,786 + GFF4067 0.26 -0.9 281,787 - GFF4067 0.26 +1.2 281,787 - GFF4067 0.26 -0.1 281,787 - GFF4067 0.26 -0.7 281,927 + GFF4067 0.34 -0.4 282,083 + GFF4067 0.44 -0.3 282,143 + GFF4067 0.48 -0.6 282,143 + GFF4067 0.48 +0.8 282,144 - GFF4067 0.48 +0.2 282,144 - GFF4067 0.48 +0.5
Or see this region's nucleotide sequence