Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4039 and GFF4040 are separated by 15 nucleotides GFF4040 and GFF4041 are separated by 749 nucleotides GFF4041 and GFF4042 are separated by 514 nucleotides
GFF4039 - Heavy metal RND efflux outer membrane protein, CzcC family, at 248,948 to 250,267
GFF4039
GFF4040 - no description, at 250,283 to 250,414
GFF4040
GFF4041 - Lipid A phosphoethanolamine transferase, putative, at 251,164 to 252,579
GFF4041
GFF4042 - Copper-sensing two-component system response regulator CusR, at 253,094 to 253,777
GFF4042
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 250.279 kb on - strand at 250.412 kb on + strand at 250.412 kb on + strand at 250.413 kb on - strand at 250.413 kb on - strand at 250.413 kb on - strand at 250.416 kb on + strand at 250.416 kb on + strand at 250.417 kb on - strand at 250.417 kb on - strand at 250.447 kb on - strand at 250.638 kb on - strand at 250.693 kb on + strand at 250.704 kb on + strand at 250.704 kb on + strand at 250.704 kb on + strand at 250.705 kb on - strand at 250.705 kb on - strand at 250.705 kb on - strand at 250.705 kb on - strand at 250.705 kb on - strand at 250.705 kb on - strand at 250.735 kb on - strand at 250.740 kb on + strand at 250.803 kb on - strand at 250.803 kb on - strand at 251.227 kb on + strand at 251.228 kb on - strand at 251.441 kb on + strand, within GFF4041 at 251.441 kb on + strand, within GFF4041 at 251.441 kb on + strand, within GFF4041 at 251.483 kb on + strand, within GFF4041 at 251.483 kb on + strand, within GFF4041 at 251.483 kb on + strand, within GFF4041 at 251.484 kb on - strand, within GFF4041 at 251.484 kb on - strand, within GFF4041 at 251.525 kb on - strand, within GFF4041 at 251.576 kb on + strand, within GFF4041 at 251.576 kb on + strand, within GFF4041 at 251.577 kb on - strand, within GFF4041 at 251.577 kb on - strand, within GFF4041 at 251.577 kb on - strand, within GFF4041 at 251.666 kb on + strand, within GFF4041 at 251.669 kb on + strand, within GFF4041 at 251.670 kb on - strand, within GFF4041 at 252.154 kb on - strand, within GFF4041 at 252.221 kb on + strand, within GFF4041 at 252.236 kb on + strand, within GFF4041 at 252.236 kb on + strand, within GFF4041 at 252.236 kb on + strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.237 kb on - strand, within GFF4041 at 252.303 kb on - strand, within GFF4041 at 252.309 kb on + strand, within GFF4041 at 252.309 kb on + strand, within GFF4041 at 252.551 kb on + strand at 252.551 kb on + strand at 252.552 kb on - strand at 252.552 kb on - strand at 252.583 kb on + strand at 252.584 kb on - strand at 252.746 kb on - strand at 252.746 kb on - strand at 252.981 kb on - strand at 252.981 kb on - strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.991 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.226 kb on + strand, within GFF4042 at 253.227 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 250,279 - -2.5 250,412 + +0.5 250,412 + -0.4 250,413 - -0.6 250,413 - -0.9 250,413 - -0.2 250,416 + +0.6 250,416 + +0.1 250,417 - +0.9 250,417 - -0.1 250,447 - -0.1 250,638 - +0.1 250,693 + -0.0 250,704 + -1.6 250,704 + -0.7 250,704 + -0.8 250,705 - +1.0 250,705 - -0.9 250,705 - +1.1 250,705 - -0.2 250,705 - -0.6 250,705 - -0.2 250,735 - -0.5 250,740 + -0.3 250,803 - +0.4 250,803 - +0.5 251,227 + +0.1 251,228 - +0.7 251,441 + GFF4041 0.20 +0.1 251,441 + GFF4041 0.20 +0.7 251,441 + GFF4041 0.20 -0.5 251,483 + GFF4041 0.23 +0.2 251,483 + GFF4041 0.23 -2.9 251,483 + GFF4041 0.23 +0.0 251,484 - GFF4041 0.23 +0.2 251,484 - GFF4041 0.23 +0.1 251,525 - GFF4041 0.25 -0.1 251,576 + GFF4041 0.29 +0.9 251,576 + GFF4041 0.29 -0.5 251,577 - GFF4041 0.29 -0.5 251,577 - GFF4041 0.29 +0.1 251,577 - GFF4041 0.29 -0.3 251,666 + GFF4041 0.35 +0.0 251,669 + GFF4041 0.36 -0.3 251,670 - GFF4041 0.36 +1.3 252,154 - GFF4041 0.70 +1.0 252,221 + GFF4041 0.75 +1.1 252,236 + GFF4041 0.76 +0.4 252,236 + GFF4041 0.76 -1.0 252,236 + GFF4041 0.76 -0.5 252,237 - GFF4041 0.76 +0.7 252,237 - GFF4041 0.76 -0.6 252,237 - GFF4041 0.76 +0.3 252,237 - GFF4041 0.76 +0.4 252,237 - GFF4041 0.76 -0.6 252,303 - GFF4041 0.80 +0.2 252,309 + GFF4041 0.81 +0.6 252,309 + GFF4041 0.81 +0.3 252,551 + -0.1 252,551 + -0.5 252,552 - +0.3 252,552 - -0.5 252,583 + +0.0 252,584 - +0.3 252,746 - +1.0 252,746 - -1.3 252,981 - -1.4 252,981 - +0.7 252,990 + -0.3 252,990 + -1.5 252,990 + -0.4 252,990 + +0.4 252,991 - -1.1 253,057 + +0.2 253,057 + -0.8 253,137 - -0.1 253,137 - +0.2 253,226 + GFF4042 0.19 -0.4 253,227 - GFF4042 0.19 -0.6 253,383 - GFF4042 0.42 +0.1 253,383 - GFF4042 0.42 +0.3
Or see this region's nucleotide sequence