Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3977 and GFF3978 are separated by 1 nucleotides GFF3978 and GFF3979 are separated by 28 nucleotides
GFF3977 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 180,180 to 181,346
GFF3977
GFF3978 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 181,348 to 182,493
GFF3978
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1 at 180.354 kb on + strand, within GFF3977 at 180.355 kb on - strand, within GFF3977 at 180.708 kb on + strand, within GFF3977 at 180.898 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 180.913 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.111 kb on - strand, within GFF3977 at 181.134 kb on + strand, within GFF3977 at 181.255 kb on - strand at 181.859 kb on + strand, within GFF3978 at 181.859 kb on + strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.860 kb on - strand, within GFF3978 at 181.864 kb on + strand, within GFF3978 at 182.029 kb on + strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.030 kb on - strand, within GFF3978 at 182.053 kb on + strand, within GFF3978 at 182.054 kb on - strand, within GFF3978 at 182.069 kb on - strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.272 kb on + strand, within GFF3978 at 182.273 kb on - strand, within GFF3978 at 182.281 kb on + strand, within GFF3978 at 182.401 kb on + strand at 182.484 kb on - strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.858 kb on + strand, within GFF3979 at 183.026 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.141 kb on - strand, within GFF3979 at 183.264 kb on + strand, within GFF3979 at 183.265 kb on - strand, within GFF3979 at 183.369 kb on - strand, within GFF3979 at 183.386 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 180,354 + GFF3977 0.15 -0.1 180,355 - GFF3977 0.15 +0.1 180,708 + GFF3977 0.45 -0.3 180,898 - GFF3977 0.62 -0.2 180,913 - GFF3977 0.63 -1.3 180,913 - GFF3977 0.63 -0.2 181,111 - GFF3977 0.80 -1.4 181,111 - GFF3977 0.80 -0.2 181,134 + GFF3977 0.82 +0.3 181,255 - -0.0 181,859 + GFF3978 0.45 -0.3 181,859 + GFF3978 0.45 +1.7 181,860 - GFF3978 0.45 -1.9 181,860 - GFF3978 0.45 -0.4 181,864 + GFF3978 0.45 +0.3 182,029 + GFF3978 0.59 -0.2 182,030 - GFF3978 0.60 -0.6 182,030 - GFF3978 0.60 -0.9 182,053 + GFF3978 0.62 +1.7 182,054 - GFF3978 0.62 -0.5 182,069 - GFF3978 0.63 -1.2 182,272 + GFF3978 0.81 +0.8 182,272 + GFF3978 0.81 -0.4 182,273 - GFF3978 0.81 -0.6 182,281 + GFF3978 0.81 -0.7 182,401 + +0.5 182,484 - +0.3 182,531 + -1.2 182,531 + -0.6 182,531 + +0.5 182,858 + GFF3979 0.25 -0.1 183,026 + GFF3979 0.38 -0.9 183,140 + GFF3979 0.47 -0.4 183,140 + GFF3979 0.47 +0.0 183,141 - GFF3979 0.47 -0.4 183,264 + GFF3979 0.56 -0.5 183,265 - GFF3979 0.56 +0.5 183,369 - GFF3979 0.64 -0.1 183,386 + GFF3979 0.65 +0.8 183,435 + GFF3979 0.69 +0.3 183,435 + GFF3979 0.69 -0.5
Or see this region's nucleotide sequence