Strain Fitness in Variovorax sp. SCN45 around GFF3939

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3937 and GFF3938 overlap by 40 nucleotidesGFF3938 and GFF3939 overlap by 4 nucleotidesGFF3939 and GFF3940 are separated by 125 nucleotides GFF3937 - Transcriptional regulator, AraC family, at 141,192 to 142,196 GFF3937 GFF3938 - Intracellular protease, at 142,157 to 142,783 GFF3938 GFF3939 - Hydrolase, HAD superfamily, at 142,780 to 143,340 GFF3939 GFF3940 - putative membrane protein, at 143,466 to 144,557 GFF3940 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 142.158 kb on + strandat 142.159 kb on - strandat 142.200 kb on + strandat 142.200 kb on + strandat 142.200 kb on + strandat 142.201 kb on - strandat 142.201 kb on - strandat 142.201 kb on - strandat 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.553 kb on + strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.554 kb on - strand, within GFF3938at 142.767 kb on - strandat 142.767 kb on - strandat 142.767 kb on - strandat 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.934 kb on + strand, within GFF3939at 142.935 kb on - strand, within GFF3939at 142.935 kb on - strand, within GFF3939at 143.037 kb on + strand, within GFF3939at 143.037 kb on + strand, within GFF3939at 143.187 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.258 kb on + strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.259 kb on - strand, within GFF3939at 143.286 kb on - strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.503 kb on + strandat 143.504 kb on - strandat 143.504 kb on - strandat 143.504 kb on - strandat 143.509 kb on + strandat 143.509 kb on + strandat 143.510 kb on - strandat 143.510 kb on - strandat 143.512 kb on + strandat 143.512 kb on + strandat 143.512 kb on + strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.513 kb on - strandat 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.632 kb on + strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.633 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.745 kb on - strand, within GFF3940at 143.792 kb on - strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.004 kb on + strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.005 kb on - strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.073 kb on + strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.074 kb on - strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.118 kb on + strand, within GFF3940at 144.138 kb on + strand, within GFF3940at 144.138 kb on + strand, within GFF3940at 144.138 kb on + strand, within GFF3940at 144.139 kb on - strand, within GFF3940at 144.139 kb on - strand, within GFF3940at 144.139 kb on - strand, within GFF3940at 144.175 kb on + strand, within GFF3940at 144.175 kb on + strand, within GFF3940at 144.175 kb on + strand, within GFF3940at 144.176 kb on - strand, within GFF3940at 144.176 kb on - strand, within GFF3940at 144.176 kb on - strand, within GFF3940at 144.193 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.217 kb on + strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.218 kb on - strand, within GFF3940at 144.218 kb on - strand, within GFF3940

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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142,158 + -0.1
142,159 - -0.9
142,200 + -1.1
142,200 + +0.3
142,200 + -0.3
142,201 - +0.1
142,201 - -0.3
142,201 - -0.4
142,553 + GFF3938 0.63 +2.7
142,553 + GFF3938 0.63 -0.5
142,553 + GFF3938 0.63 +0.6
142,553 + GFF3938 0.63 +1.1
142,553 + GFF3938 0.63 -0.7
142,553 + GFF3938 0.63 -0.7
142,553 + GFF3938 0.63 -0.5
142,553 + GFF3938 0.63 +0.5
142,553 + GFF3938 0.63 -0.4
142,553 + GFF3938 0.63 -0.4
142,553 + GFF3938 0.63 -0.4
142,553 + GFF3938 0.63 +0.9
142,554 - GFF3938 0.63 -0.3
142,554 - GFF3938 0.63 -1.0
142,554 - GFF3938 0.63 -0.5
142,554 - GFF3938 0.63 -0.2
142,554 - GFF3938 0.63 -2.6
142,554 - GFF3938 0.63 -1.2
142,554 - GFF3938 0.63 +1.7
142,554 - GFF3938 0.63 +0.9
142,554 - GFF3938 0.63 +0.3
142,554 - GFF3938 0.63 -0.3
142,554 - GFF3938 0.63 -1.6
142,554 - GFF3938 0.63 -0.4
142,554 - GFF3938 0.63 -1.3
142,554 - GFF3938 0.63 -0.1
142,554 - GFF3938 0.63 -0.3
142,554 - GFF3938 0.63 +0.4
142,554 - GFF3938 0.63 -0.2
142,767 - +0.4
142,767 - -0.7
142,767 - -0.5
142,934 + GFF3939 0.27 -1.0
142,934 + GFF3939 0.27 +0.6
142,934 + GFF3939 0.27 -0.2
142,934 + GFF3939 0.27 +0.3
142,934 + GFF3939 0.27 -0.8
142,934 + GFF3939 0.27 -0.2
142,934 + GFF3939 0.27 -1.2
142,934 + GFF3939 0.27 +0.1
142,934 + GFF3939 0.27 -0.6
142,934 + GFF3939 0.27 -1.6
142,935 - GFF3939 0.28 -0.6
142,935 - GFF3939 0.28 +0.1
143,037 + GFF3939 0.46 -0.9
143,037 + GFF3939 0.46 +0.1
143,187 + GFF3939 0.73 -0.9
143,258 + GFF3939 0.85 -1.3
143,258 + GFF3939 0.85 -0.9
143,258 + GFF3939 0.85 +0.2
143,259 - GFF3939 0.85 -1.6
143,259 - GFF3939 0.85 +0.6
143,259 - GFF3939 0.85 +0.2
143,259 - GFF3939 0.85 -0.5
143,286 - -2.2
143,503 + -1.1
143,503 + +0.1
143,503 + -0.5
143,503 + -1.6
143,503 + -0.5
143,503 + -0.8
143,503 + -0.6
143,503 + -0.1
143,504 - -1.9
143,504 - -0.8
143,504 - -2.0
143,509 + -0.9
143,509 + +0.1
143,510 - +0.3
143,510 - -0.5
143,512 + +1.1
143,512 + -1.3
143,512 + -0.7
143,513 - -0.1
143,513 - -1.0
143,513 - +0.3
143,632 + GFF3940 0.15 +1.1
143,632 + GFF3940 0.15 +0.0
143,632 + GFF3940 0.15 -1.3
143,632 + GFF3940 0.15 -0.0
143,633 - GFF3940 0.15 +0.5
143,633 - GFF3940 0.15 -0.3
143,633 - GFF3940 0.15 +0.5
143,633 - GFF3940 0.15 -0.4
143,633 - GFF3940 0.15 -0.7
143,745 - GFF3940 0.26 -0.5
143,745 - GFF3940 0.26 +0.1
143,745 - GFF3940 0.26 +0.4
143,792 - GFF3940 0.30 -0.2
144,004 + GFF3940 0.49 -0.2
144,004 + GFF3940 0.49 +0.9
144,004 + GFF3940 0.49 -0.5
144,004 + GFF3940 0.49 +1.4
144,004 + GFF3940 0.49 -0.5
144,005 - GFF3940 0.49 -0.2
144,005 - GFF3940 0.49 -1.7
144,005 - GFF3940 0.49 -0.7
144,005 - GFF3940 0.49 -1.0
144,005 - GFF3940 0.49 +0.3
144,005 - GFF3940 0.49 -0.6
144,005 - GFF3940 0.49 -1.3
144,005 - GFF3940 0.49 +0.8
144,005 - GFF3940 0.49 -1.2
144,005 - GFF3940 0.49 +0.5
144,005 - GFF3940 0.49 +0.3
144,005 - GFF3940 0.49 -0.6
144,005 - GFF3940 0.49 +1.7
144,073 + GFF3940 0.56 -0.2
144,073 + GFF3940 0.56 -0.8
144,073 + GFF3940 0.56 +0.7
144,073 + GFF3940 0.56 +1.4
144,073 + GFF3940 0.56 -1.0
144,073 + GFF3940 0.56 -0.5
144,074 - GFF3940 0.56 -0.4
144,074 - GFF3940 0.56 -1.3
144,074 - GFF3940 0.56 -0.1
144,074 - GFF3940 0.56 -0.3
144,118 + GFF3940 0.60 +0.8
144,118 + GFF3940 0.60 -0.3
144,118 + GFF3940 0.60 +1.3
144,118 + GFF3940 0.60 -1.2
144,118 + GFF3940 0.60 -0.7
144,138 + GFF3940 0.62 -0.5
144,138 + GFF3940 0.62 +0.3
144,138 + GFF3940 0.62 -0.2
144,139 - GFF3940 0.62 +0.2
144,139 - GFF3940 0.62 +0.1
144,139 - GFF3940 0.62 -0.5
144,175 + GFF3940 0.65 -0.3
144,175 + GFF3940 0.65 -0.9
144,175 + GFF3940 0.65 +0.3
144,176 - GFF3940 0.65 +0.3
144,176 - GFF3940 0.65 +1.2
144,176 - GFF3940 0.65 +0.1
144,193 + GFF3940 0.67 -0.2
144,217 + GFF3940 0.69 +1.7
144,217 + GFF3940 0.69 -0.5
144,217 + GFF3940 0.69 -0.6
144,217 + GFF3940 0.69 +0.1
144,217 + GFF3940 0.69 -1.2
144,217 + GFF3940 0.69 +0.1
144,217 + GFF3940 0.69 +0.7
144,218 - GFF3940 0.69 +0.8
144,218 - GFF3940 0.69 -0.4
144,218 - GFF3940 0.69 +0.2
144,218 - GFF3940 0.69 -1.1

Or see this region's nucleotide sequence