Strain Fitness in Variovorax sp. SCN45 around GFF3908

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
111,784	+				-0.6
111,785	-				+0.5
111,904	+				+0.1
111,904	+				-1.9
111,904	+				+0.3
111,904	+				+0.0
111,904	+				+0.1
111,904	+				+0.8
111,904	+				+0.4
111,904	+				-0.1
111,904	+				+0.6
111,904	+				+0.7
111,905	-				-0.3
111,905	-				+0.3
111,905	-				-0.2
111,905	-				+0.4
111,905	-				-0.6
111,905	-				-1.0
111,905	-				-1.0
111,905	-				+0.5
111,905	-				-0.0
112,145	-				-2.4
112,155	+				-0.5
112,156	-				-0.2
112,158	+				-0.5
112,158	+				+0.8
112,159	-				-0.5
112,159	-				-0.6
112,159	-				+0.7
112,159	-				+0.4
112,159	-				-0.3
112,159	-				-0.3
112,341	+		GFF3908	0.40	+0.2
112,341	+		GFF3908	0.40	-0.7
112,342	-		GFF3908	0.40	-1.5
112,640	+				+0.9
112,640	+				-0.3
112,641	-				-0.3
112,641	-				-0.7
112,704	+				+1.9
112,704	+				+0.3
112,705	-				-0.3
112,705	-				-0.4
112,780	+				-0.6
112,780	+				+0.3
112,780	+				-0.7
112,780	+				-0.3
112,780	+				+0.4
112,780	+				+1.1
112,780	+				+0.3
112,780	+				-1.1
112,781	-				-1.6
112,781	-				+0.9
112,781	-				-0.4
112,781	-				-2.0
112,781	-				+0.7
112,781	-				+1.0
112,781	-				-0.9
113,119	+		GFF3909	0.14	-1.0
113,119	+		GFF3909	0.14	+1.7
113,120	-		GFF3909	0.14	-0.2
113,120	-		GFF3909	0.14	+1.7
113,120	-		GFF3909	0.14	-0.0
113,120	-		GFF3909	0.14	-0.6
113,122	+		GFF3909	0.15	-0.7
113,123	-		GFF3909	0.15	+0.4
113,123	-		GFF3909	0.15	-0.4
113,123	-		GFF3909	0.15	+0.7
113,123	-		GFF3909	0.15	+0.9
113,165	+		GFF3909	0.16	-2.0
113,185	+		GFF3909	0.17	-1.0
113,220	+		GFF3909	0.18	-0.3
113,221	-		GFF3909	0.18	+0.7
113,275	+		GFF3909	0.20	+0.3
113,276	-		GFF3909	0.20	+0.8
113,276	-		GFF3909	0.20	-0.2
113,276	-		GFF3909	0.20	-0.1
113,276	-		GFF3909	0.20	+0.0
113,305	+		GFF3909	0.21	-0.2
113,306	-		GFF3909	0.21	+1.0
113,329	+		GFF3909	0.22	-0.7
113,329	+		GFF3909	0.22	-0.3
113,329	+		GFF3909	0.22	-1.5
113,329	+		GFF3909	0.22	-0.7
113,329	+		GFF3909	0.22	+0.1
113,329	+		GFF3909	0.22	-0.6
113,329	+		GFF3909	0.22	-0.9
113,329	+		GFF3909	0.22	-0.5
113,329	+		GFF3909	0.22	+0.1
113,329	+		GFF3909	0.22	-0.4
113,329	+		GFF3909	0.22	+0.0
113,329	+		GFF3909	0.22	-0.2
113,329	+		GFF3909	0.22	-0.6
113,329	+		GFF3909	0.22	-0.5
113,330	-		GFF3909	0.22	-1.1
113,330	-		GFF3909	0.22	-0.7
113,330	-		GFF3909	0.22	+0.1
113,330	-		GFF3909	0.22	-0.5
113,330	-		GFF3909	0.22	+0.9
113,330	-		GFF3909	0.22	-0.3
113,330	-		GFF3909	0.22	-0.3
113,330	-		GFF3909	0.22	+0.2
113,330	-		GFF3909	0.22	+0.6
113,330	-		GFF3909	0.22	+0.3
113,332	+		GFF3909	0.22	+0.1
113,449	+		GFF3909	0.26	-2.8
113,449	+		GFF3909	0.26	+0.7
113,449	+		GFF3909	0.26	-0.3
113,449	+		GFF3909	0.26	-1.6
113,449	+		GFF3909	0.26	-0.5
113,450	-		GFF3909	0.26	-0.5
113,450	-		GFF3909	0.26	-0.7
113,450	-		GFF3909	0.26	-0.1
113,450	-		GFF3909	0.26	+0.1
113,450	-		GFF3909	0.26	-1.0
113,450	-		GFF3909	0.26	-0.5
113,450	-		GFF3909	0.26	+0.1
113,450	-		GFF3909	0.26	-0.6
113,530	+		GFF3909	0.29	-1.3
113,530	+		GFF3909	0.29	-0.2
113,530	+		GFF3909	0.29	-0.4
113,530	+		GFF3909	0.29	+0.2
113,530	+		GFF3909	0.29	-0.4
113,530	+		GFF3909	0.29	-0.5
113,530	+		GFF3909	0.29	+1.7
113,530	+		GFF3909	0.29	+0.1
113,531	-		GFF3909	0.29	+0.4
113,531	-		GFF3909	0.29	+0.1
113,531	-		GFF3909	0.29	-0.6
113,531	-		GFF3909	0.29	-1.2
113,531	-		GFF3909	0.29	-0.5
113,531	-		GFF3909	0.29	-1.0
113,531	-		GFF3909	0.29	+0.0
113,531	-		GFF3909	0.29	-1.0