Strain Fitness in Variovorax sp. SCN45 around GFF3766

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3764 and GFF3765 overlap by 4 nucleotidesGFF3765 and GFF3766 overlap by 11 nucleotidesGFF3766 and GFF3767 overlap by 14 nucleotidesGFF3767 and GFF3768 overlap by 4 nucleotides GFF3764 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 256,022 to 256,753 GFF3764 GFF3765 - no description, at 256,750 to 257,751 GFF3765 GFF3766 - hypothetical protein, at 257,741 to 258,472 GFF3766 GFF3767 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 258,459 to 259,235 GFF3767 GFF3768 - no description, at 259,232 to 260,482 GFF3768 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.777 kb on + strandat 256.777 kb on + strandat 256.864 kb on + strand, within GFF3765at 256.909 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.970 kb on - strand, within GFF3765at 256.985 kb on - strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.054 kb on - strand, within GFF3765at 257.054 kb on - strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.365 kb on + strand, within GFF3765at 257.366 kb on - strand, within GFF3765at 257.476 kb on + strand, within GFF3765at 257.554 kb on + strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.592 kb on - strand, within GFF3765at 257.638 kb on + strand, within GFF3765at 257.639 kb on - strand, within GFF3765at 257.677 kb on + strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 258.218 kb on + strand, within GFF3766at 258.347 kb on + strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.380 kb on + strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.964 kb on - strand, within GFF3767at 259.119 kb on + strand, within GFF3767at 259.119 kb on + strand, within GFF3767at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.367 kb on + strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.368 kb on - strand, within GFF3768at 259.472 kb on + strand, within GFF3768

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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256,777 + +0.2
256,777 + +0.6
256,864 + GFF3765 0.11 -1.2
256,909 + GFF3765 0.16 -0.1
256,969 + GFF3765 0.22 +0.3
256,969 + GFF3765 0.22 +0.6
256,969 + GFF3765 0.22 +1.4
256,969 + GFF3765 0.22 +0.4
256,969 + GFF3765 0.22 -0.4
256,969 + GFF3765 0.22 -0.4
256,969 + GFF3765 0.22 -0.3
256,970 - GFF3765 0.22 +0.4
256,985 - GFF3765 0.23 -0.2
257,053 + GFF3765 0.30 +0.7
257,053 + GFF3765 0.30 +0.3
257,053 + GFF3765 0.30 -0.3
257,053 + GFF3765 0.30 -0.4
257,054 - GFF3765 0.30 -0.3
257,054 - GFF3765 0.30 +0.3
257,179 + GFF3765 0.43 -1.4
257,179 + GFF3765 0.43 +0.1
257,179 + GFF3765 0.43 -0.6
257,180 - GFF3765 0.43 -0.4
257,180 - GFF3765 0.43 -0.5
257,180 - GFF3765 0.43 -0.2
257,180 - GFF3765 0.43 -0.0
257,180 - GFF3765 0.43 -0.4
257,180 - GFF3765 0.43 +1.0
257,248 + GFF3765 0.50 -0.8
257,248 + GFF3765 0.50 +0.5
257,248 + GFF3765 0.50 -0.5
257,248 + GFF3765 0.50 -0.4
257,248 + GFF3765 0.50 +1.0
257,249 - GFF3765 0.50 -0.1
257,249 - GFF3765 0.50 -1.4
257,249 - GFF3765 0.50 +1.0
257,365 + GFF3765 0.61 +0.9
257,366 - GFF3765 0.61 -0.6
257,476 + GFF3765 0.72 -0.0
257,554 + GFF3765 0.80 -0.4
257,555 - GFF3765 0.80 -0.0
257,555 - GFF3765 0.80 -1.0
257,592 - GFF3765 0.84 -0.4
257,638 + GFF3765 0.89 -0.7
257,639 - GFF3765 0.89 +0.4
257,677 + -0.3
257,678 - +0.6
257,678 - +0.2
257,678 - +0.1
257,678 - +0.2
257,678 - -0.1
257,678 - +0.0
257,678 - +1.0
257,861 + GFF3766 0.16 -0.4
257,861 + GFF3766 0.16 +1.2
257,861 + GFF3766 0.16 -0.4
257,861 + GFF3766 0.16 -0.5
257,861 + GFF3766 0.16 -0.3
257,861 + GFF3766 0.16 -0.8
257,861 + GFF3766 0.16 -0.2
257,862 - GFF3766 0.17 -1.0
257,862 - GFF3766 0.17 -0.3
257,862 - GFF3766 0.17 +1.5
257,862 - GFF3766 0.17 -0.7
257,862 - GFF3766 0.17 -0.9
257,862 - GFF3766 0.17 -0.4
257,862 - GFF3766 0.17 +0.4
258,218 + GFF3766 0.65 -2.5
258,347 + GFF3766 0.83 -0.2
258,348 - GFF3766 0.83 +0.1
258,348 - GFF3766 0.83 -0.5
258,348 - GFF3766 0.83 -0.2
258,348 - GFF3766 0.83 -0.2
258,380 + GFF3766 0.87 +0.0
258,381 - GFF3766 0.87 +0.7
258,381 - GFF3766 0.87 -1.1
258,404 + +0.6
258,404 + -0.1
258,404 + +1.6
258,404 + -0.7
258,404 + +0.6
258,404 + -0.4
258,404 + -1.7
258,404 + -0.4
258,405 - -0.4
258,405 - -1.3
258,405 - -0.4
258,405 - -0.6
258,405 - +0.1
258,964 - GFF3767 0.65 -1.1
259,119 + GFF3767 0.85 +0.4
259,119 + GFF3767 0.85 -1.8
259,367 + GFF3768 0.11 +1.0
259,367 + GFF3768 0.11 +0.5
259,367 + GFF3768 0.11 -0.3
259,367 + GFF3768 0.11 -0.0
259,367 + GFF3768 0.11 +0.2
259,367 + GFF3768 0.11 +0.1
259,367 + GFF3768 0.11 -0.4
259,367 + GFF3768 0.11 +2.0
259,367 + GFF3768 0.11 +0.6
259,367 + GFF3768 0.11 +0.9
259,367 + GFF3768 0.11 -0.4
259,367 + GFF3768 0.11 +0.2
259,367 + GFF3768 0.11 -0.1
259,368 - GFF3768 0.11 -0.1
259,368 - GFF3768 0.11 -1.9
259,368 - GFF3768 0.11 +0.1
259,368 - GFF3768 0.11 +1.5
259,368 - GFF3768 0.11 -0.4
259,368 - GFF3768 0.11 -1.0
259,368 - GFF3768 0.11 -0.4
259,368 - GFF3768 0.11 -0.2
259,368 - GFF3768 0.11 +0.5
259,472 + GFF3768 0.19 +0.4

Or see this region's nucleotide sequence