Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3711 and GFF3712 are separated by 22 nucleotides GFF3712 and GFF3713 are separated by 72 nucleotides GFF3713 and GFF3714 are separated by 116 nucleotides GFF3714 and GFF3715 are separated by 14 nucleotides
GFF3711 - oxidoreductase, 2OG-Fe(II) oxygenase family, at 210,931 to 211,932
GFF3711
GFF3712 - no description, at 211,955 to 212,086
GFF3712
GFF3713 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 212,159 to 212,866
GFF3713
GFF3714 - FMN reductase (NADH) RutF (EC 1.5.1.42), at 212,983 to 213,531
GFF3714
GFF3715 - Probable malonic semialdehyde reductase RutE (EC 1.1.1.298), at 213,546 to 214,145
GFF3715
Position (kb) 212
213 Strain fitness (log2 ratio) -1
0
1
2 at 211.494 kb on - strand, within GFF3711 at 211.502 kb on + strand, within GFF3711 at 211.502 kb on + strand, within GFF3711 at 211.502 kb on + strand, within GFF3711 at 211.781 kb on - strand, within GFF3711 at 211.892 kb on + strand at 212.105 kb on + strand at 212.106 kb on - strand at 212.396 kb on + strand, within GFF3713 at 212.396 kb on + strand, within GFF3713 at 212.397 kb on - strand, within GFF3713 at 212.397 kb on - strand, within GFF3713 at 212.399 kb on + strand, within GFF3713 at 212.423 kb on + strand, within GFF3713 at 212.423 kb on + strand, within GFF3713 at 212.423 kb on + strand, within GFF3713 at 212.424 kb on - strand, within GFF3713 at 212.516 kb on + strand, within GFF3713 at 212.517 kb on - strand, within GFF3713 at 212.744 kb on + strand, within GFF3713 at 212.744 kb on + strand, within GFF3713 at 213.029 kb on + strand at 213.030 kb on - strand at 213.856 kb on + strand, within GFF3715
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 211,494 - GFF3711 0.56 +0.6 211,502 + GFF3711 0.57 -1.1 211,502 + GFF3711 0.57 +1.4 211,502 + GFF3711 0.57 -1.4 211,781 - GFF3711 0.85 +0.2 211,892 + -1.7 212,105 + +0.4 212,106 - -0.4 212,396 + GFF3713 0.33 +0.4 212,396 + GFF3713 0.33 +1.0 212,397 - GFF3713 0.34 +0.9 212,397 - GFF3713 0.34 +2.7 212,399 + GFF3713 0.34 +0.2 212,423 + GFF3713 0.37 +1.2 212,423 + GFF3713 0.37 +0.1 212,423 + GFF3713 0.37 -0.5 212,424 - GFF3713 0.37 -0.4 212,516 + GFF3713 0.50 +0.6 212,517 - GFF3713 0.51 +0.5 212,744 + GFF3713 0.83 -1.0 212,744 + GFF3713 0.83 +0.7 213,029 + -0.5 213,030 - -1.4 213,856 + GFF3715 0.52 +0.4
Or see this region's nucleotide sequence