Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3571 and GFF3572 overlap by 11 nucleotides GFF3572 and GFF3573 are separated by 3 nucleotides
GFF3571 - hypothetical protein, at 82,997 to 84,529
GFF3571
GFF3572 - Efflux ABC transporter, permease protein, at 84,519 to 85,346
GFF3572
GFF3573 - Efflux ABC transporter, ATP-binding protein, at 85,350 to 86,294
GFF3573
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1 at 83.624 kb on + strand, within GFF3571 at 83.624 kb on + strand, within GFF3571 at 83.624 kb on + strand, within GFF3571 at 84.080 kb on + strand, within GFF3571 at 84.080 kb on + strand, within GFF3571 at 84.080 kb on + strand, within GFF3571 at 84.081 kb on - strand, within GFF3571 at 84.081 kb on - strand, within GFF3571 at 84.577 kb on + strand at 84.577 kb on + strand at 84.578 kb on - strand at 84.766 kb on + strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.767 kb on - strand, within GFF3572 at 84.769 kb on + strand, within GFF3572 at 84.769 kb on + strand, within GFF3572 at 84.770 kb on - strand, within GFF3572 at 84.770 kb on - strand, within GFF3572 at 84.784 kb on + strand, within GFF3572 at 84.785 kb on - strand, within GFF3572 at 84.785 kb on - strand, within GFF3572 at 84.785 kb on - strand, within GFF3572 at 84.785 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.046 kb on - strand, within GFF3572 at 85.114 kb on + strand, within GFF3572 at 85.114 kb on + strand, within GFF3572 at 85.114 kb on + strand, within GFF3572 at 85.114 kb on + strand, within GFF3572 at 85.114 kb on + strand, within GFF3572 at 85.114 kb on + strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.115 kb on - strand, within GFF3572 at 85.352 kb on - strand at 85.480 kb on + strand, within GFF3573 at 85.481 kb on - strand, within GFF3573 at 85.570 kb on + strand, within GFF3573 at 85.570 kb on + strand, within GFF3573 at 85.570 kb on + strand, within GFF3573 at 85.571 kb on - strand, within GFF3573 at 85.963 kb on + strand, within GFF3573 at 85.972 kb on + strand, within GFF3573 at 85.972 kb on + strand, within GFF3573 at 86.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 83,624 + GFF3571 0.41 +0.5 83,624 + GFF3571 0.41 -0.5 83,624 + GFF3571 0.41 -0.1 84,080 + GFF3571 0.71 -1.2 84,080 + GFF3571 0.71 +0.2 84,080 + GFF3571 0.71 -0.1 84,081 - GFF3571 0.71 +0.6 84,081 - GFF3571 0.71 -0.7 84,577 + +0.4 84,577 + -0.8 84,578 - -1.0 84,766 + GFF3572 0.30 +1.0 84,767 - GFF3572 0.30 +0.2 84,767 - GFF3572 0.30 +0.1 84,767 - GFF3572 0.30 -0.6 84,767 - GFF3572 0.30 +0.3 84,767 - GFF3572 0.30 -0.3 84,767 - GFF3572 0.30 +1.6 84,767 - GFF3572 0.30 -2.1 84,767 - GFF3572 0.30 -0.2 84,767 - GFF3572 0.30 -0.6 84,767 - GFF3572 0.30 -0.0 84,769 + GFF3572 0.30 -0.1 84,769 + GFF3572 0.30 -2.0 84,770 - GFF3572 0.30 +0.1 84,770 - GFF3572 0.30 +0.6 84,784 + GFF3572 0.32 -0.0 84,785 - GFF3572 0.32 -0.4 84,785 - GFF3572 0.32 -0.5 84,785 - GFF3572 0.32 -0.6 84,785 - GFF3572 0.32 -0.7 85,046 - GFF3572 0.64 +1.5 85,046 - GFF3572 0.64 +1.0 85,046 - GFF3572 0.64 -0.1 85,046 - GFF3572 0.64 -1.0 85,046 - GFF3572 0.64 -1.4 85,046 - GFF3572 0.64 -0.5 85,046 - GFF3572 0.64 -1.0 85,114 + GFF3572 0.72 -0.1 85,114 + GFF3572 0.72 -0.6 85,114 + GFF3572 0.72 -0.3 85,114 + GFF3572 0.72 -0.5 85,114 + GFF3572 0.72 +1.4 85,114 + GFF3572 0.72 +0.1 85,115 - GFF3572 0.72 -1.4 85,115 - GFF3572 0.72 -0.9 85,115 - GFF3572 0.72 -0.6 85,115 - GFF3572 0.72 +0.1 85,115 - GFF3572 0.72 -1.0 85,115 - GFF3572 0.72 +0.0 85,115 - GFF3572 0.72 +0.8 85,115 - GFF3572 0.72 +0.1 85,115 - GFF3572 0.72 -0.0 85,115 - GFF3572 0.72 -0.5 85,115 - GFF3572 0.72 -0.6 85,115 - GFF3572 0.72 -0.4 85,115 - GFF3572 0.72 -1.5 85,352 - +0.2 85,480 + GFF3573 0.14 -0.1 85,481 - GFF3573 0.14 -0.4 85,570 + GFF3573 0.23 +0.6 85,570 + GFF3573 0.23 +0.3 85,570 + GFF3573 0.23 -1.0 85,571 - GFF3573 0.23 -1.0 85,963 + GFF3573 0.65 -0.4 85,972 + GFF3573 0.66 -0.4 85,972 + GFF3573 0.66 -0.7 86,234 - -0.3
Or see this region's nucleotide sequence