Strain Fitness in Variovorax sp. SCN45 around GFF3535

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3533 and GFF3534 are separated by 161 nucleotidesGFF3534 and GFF3535 are separated by 4 nucleotidesGFF3535 and GFF3536 are separated by 186 nucleotides GFF3533 - Two-component system sensor histidine kinase, at 39,285 to 40,685 GFF3533 GFF3534 - hypothetical protein, at 40,847 to 41,185 GFF3534 GFF3535 - Aquaporin Z, at 41,190 to 41,897 GFF3535 GFF3536 - Alcohol dehydrogenase (EC 1.1.1.1), at 42,084 to 43,094 GFF3536 Position (kb) 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 40.383 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.383 kb on + strand, within GFF3533at 40.384 kb on - strand, within GFF3533at 40.639 kb on + strandat 40.639 kb on + strandat 40.640 kb on - strandat 40.640 kb on - strandat 40.640 kb on - strandat 40.680 kb on + strandat 40.681 kb on - strandat 40.706 kb on + strandat 40.706 kb on + strandat 40.706 kb on + strandat 40.706 kb on + strandat 40.730 kb on + strandat 40.730 kb on + strandat 40.730 kb on + strandat 40.730 kb on + strandat 40.766 kb on + strandat 40.766 kb on + strandat 40.767 kb on - strandat 40.767 kb on - strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 41.102 kb on + strand, within GFF3534at 41.225 kb on - strandat 41.293 kb on + strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.294 kb on - strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.475 kb on + strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.476 kb on - strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.506 kb on + strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.507 kb on - strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.587 kb on + strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.588 kb on - strand, within GFF3535at 41.635 kb on + strand, within GFF3535at 41.636 kb on - strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.731 kb on + strand, within GFF3535at 41.852 kb on + strandat 41.959 kb on + strandat 41.959 kb on + strandat 41.959 kb on + strandat 41.960 kb on - strandat 41.960 kb on - strandat 41.960 kb on - strandat 42.160 kb on + strandat 42.161 kb on - strandat 42.161 kb on - strandat 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.280 kb on + strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536at 42.281 kb on - strand, within GFF3536

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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40,383 + GFF3533 0.78 -0.5
40,383 + GFF3533 0.78 +0.7
40,383 + GFF3533 0.78 +0.3
40,383 + GFF3533 0.78 +0.2
40,384 - GFF3533 0.78 +0.2
40,639 + -1.1
40,639 + -1.3
40,640 - -0.6
40,640 - +0.6
40,640 - -0.0
40,680 + -0.1
40,681 - -0.6
40,706 + -1.1
40,706 + -0.0
40,706 + -1.2
40,706 + -0.4
40,730 + -0.1
40,730 + +0.6
40,730 + +1.7
40,730 + -0.0
40,766 + +1.0
40,766 + +0.4
40,767 - +0.2
40,767 - -0.1
40,852 + +0.5
40,852 + +0.6
40,852 + -0.5
40,852 + -0.5
40,852 + -0.1
40,853 - -0.3
40,853 - +0.1
40,853 - -0.2
40,853 - -0.1
40,853 - -0.1
40,853 - -0.3
40,853 - -0.5
40,853 - -0.4
41,102 + GFF3534 0.75 +0.0
41,225 - +2.0
41,293 + GFF3535 0.15 +0.4
41,294 - GFF3535 0.15 -0.8
41,294 - GFF3535 0.15 +0.4
41,294 - GFF3535 0.15 -0.2
41,294 - GFF3535 0.15 +0.8
41,475 + GFF3535 0.40 -0.4
41,475 + GFF3535 0.40 +0.0
41,475 + GFF3535 0.40 -0.7
41,475 + GFF3535 0.40 +0.7
41,475 + GFF3535 0.40 -0.2
41,475 + GFF3535 0.40 -0.3
41,476 - GFF3535 0.40 +0.6
41,476 - GFF3535 0.40 +0.1
41,506 + GFF3535 0.45 -0.1
41,506 + GFF3535 0.45 +0.7
41,506 + GFF3535 0.45 +0.4
41,506 + GFF3535 0.45 +1.0
41,506 + GFF3535 0.45 -0.1
41,506 + GFF3535 0.45 +0.5
41,506 + GFF3535 0.45 -1.0
41,507 - GFF3535 0.45 -0.7
41,507 - GFF3535 0.45 -0.7
41,507 - GFF3535 0.45 +1.0
41,507 - GFF3535 0.45 +0.5
41,507 - GFF3535 0.45 -0.0
41,587 + GFF3535 0.56 +0.2
41,587 + GFF3535 0.56 +0.2
41,587 + GFF3535 0.56 -0.3
41,588 - GFF3535 0.56 -0.1
41,588 - GFF3535 0.56 +0.9
41,588 - GFF3535 0.56 +1.0
41,635 + GFF3535 0.63 +0.5
41,636 - GFF3535 0.63 +0.5
41,731 + GFF3535 0.76 -0.8
41,731 + GFF3535 0.76 +0.5
41,731 + GFF3535 0.76 -0.3
41,852 + -0.0
41,959 + +0.0
41,959 + +0.5
41,959 + -1.1
41,960 - +0.1
41,960 - -0.8
41,960 - -0.5
42,160 + -0.3
42,161 - +0.1
42,161 - -0.6
42,280 + GFF3536 0.19 +0.7
42,280 + GFF3536 0.19 -2.8
42,280 + GFF3536 0.19 +1.8
42,280 + GFF3536 0.19 -0.6
42,280 + GFF3536 0.19 -0.3
42,280 + GFF3536 0.19 -0.4
42,281 - GFF3536 0.19 +1.6
42,281 - GFF3536 0.19 -0.3
42,281 - GFF3536 0.19 -0.6
42,281 - GFF3536 0.19 -0.4
42,281 - GFF3536 0.19 -0.4
42,281 - GFF3536 0.19 -0.1
42,281 - GFF3536 0.19 -0.2

Or see this region's nucleotide sequence