Strain Fitness in Variovorax sp. SCN45 around GFF3528

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3527 and GFF3528 are separated by 73 nucleotidesGFF3528 and GFF3529 are separated by 64 nucleotides GFF3527 - UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase, at 32,605 to 33,750 GFF3527 GFF3528 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 33,824 to 35,269 GFF3528 GFF3529 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 35,334 to 36,413 GFF3529 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3at 32.990 kb on + strand, within GFF3527at 32.991 kb on - strand, within GFF3527at 32.991 kb on - strand, within GFF3527at 32.991 kb on - strand, within GFF3527at 33.329 kb on + strand, within GFF3527at 33.330 kb on - strand, within GFF3527at 33.545 kb on + strand, within GFF3527at 33.546 kb on - strand, within GFF3527at 33.546 kb on - strand, within GFF3527at 33.584 kb on + strand, within GFF3527at 33.584 kb on + strand, within GFF3527at 33.584 kb on + strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.585 kb on - strand, within GFF3527at 33.596 kb on + strand, within GFF3527at 33.596 kb on + strand, within GFF3527at 33.773 kb on + strandat 33.773 kb on + strandat 33.774 kb on - strandat 33.825 kb on + strandat 33.825 kb on + strandat 33.825 kb on + strandat 34.062 kb on + strand, within GFF3528at 34.063 kb on - strand, within GFF3528at 34.063 kb on - strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.452 kb on + strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.453 kb on - strand, within GFF3528at 34.515 kb on + strand, within GFF3528at 34.516 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.603 kb on - strand, within GFF3528at 34.605 kb on + strand, within GFF3528at 35.086 kb on - strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.097 kb on + strand, within GFF3528at 35.098 kb on - strand, within GFF3528at 35.098 kb on - strand, within GFF3528at 35.098 kb on - strand, within GFF3528at 35.154 kb on + strandat 35.154 kb on + strandat 35.154 kb on + strandat 35.154 kb on + strandat 35.154 kb on + strandat 35.155 kb on - strandat 35.155 kb on - strandat 35.155 kb on - strandat 35.155 kb on - strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.160 kb on + strandat 35.161 kb on - strandat 35.161 kb on - strandat 35.161 kb on - strandat 35.161 kb on - strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.208 kb on + strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.209 kb on - strandat 35.389 kb on + strandat 35.389 kb on + strandat 35.389 kb on + strandat 35.390 kb on - strandat 35.390 kb on - strandat 35.770 kb on + strand, within GFF3529at 35.770 kb on + strand, within GFF3529at 35.770 kb on + strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.771 kb on - strand, within GFF3529at 35.797 kb on + strand, within GFF3529at 35.803 kb on + strand, within GFF3529at 35.803 kb on + strand, within GFF3529at 35.804 kb on - strand, within GFF3529at 35.804 kb on - strand, within GFF3529at 35.815 kb on + strand, within GFF3529at 35.816 kb on - strand, within GFF3529at 35.854 kb on + strand, within GFF3529at 35.855 kb on - strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.947 kb on + strand, within GFF3529at 35.948 kb on - strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.028 kb on + strand, within GFF3529at 36.029 kb on - strand, within GFF3529at 36.029 kb on - strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.031 kb on + strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.032 kb on - strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.154 kb on + strand, within GFF3529at 36.155 kb on - strand, within GFF3529

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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32,990 + GFF3527 0.34 -0.9
32,991 - GFF3527 0.34 -0.4
32,991 - GFF3527 0.34 -0.3
32,991 - GFF3527 0.34 +0.4
33,329 + GFF3527 0.63 -0.2
33,330 - GFF3527 0.63 -1.8
33,545 + GFF3527 0.82 -0.5
33,546 - GFF3527 0.82 -1.5
33,546 - GFF3527 0.82 -0.3
33,584 + GFF3527 0.85 +3.6
33,584 + GFF3527 0.85 +0.6
33,584 + GFF3527 0.85 -0.6
33,585 - GFF3527 0.86 -0.8
33,585 - GFF3527 0.86 +0.4
33,585 - GFF3527 0.86 -0.5
33,585 - GFF3527 0.86 -0.1
33,585 - GFF3527 0.86 +1.0
33,585 - GFF3527 0.86 +1.4
33,585 - GFF3527 0.86 +1.4
33,585 - GFF3527 0.86 -0.9
33,585 - GFF3527 0.86 -0.7
33,585 - GFF3527 0.86 +2.0
33,596 + GFF3527 0.86 +1.5
33,596 + GFF3527 0.86 -0.6
33,773 + +0.6
33,773 + +1.4
33,774 - +0.2
33,825 + +0.6
33,825 + -0.4
33,825 + -0.6
34,062 + GFF3528 0.16 -0.5
34,063 - GFF3528 0.17 -1.0
34,063 - GFF3528 0.17 -0.2
34,452 + GFF3528 0.43 -0.6
34,452 + GFF3528 0.43 -2.5
34,452 + GFF3528 0.43 -0.9
34,452 + GFF3528 0.43 -0.0
34,452 + GFF3528 0.43 -0.4
34,452 + GFF3528 0.43 -0.5
34,452 + GFF3528 0.43 -0.9
34,452 + GFF3528 0.43 -0.5
34,453 - GFF3528 0.43 -0.2
34,453 - GFF3528 0.43 +0.2
34,453 - GFF3528 0.43 -0.1
34,453 - GFF3528 0.43 +0.1
34,453 - GFF3528 0.43 -1.1
34,453 - GFF3528 0.43 +0.3
34,453 - GFF3528 0.43 +0.6
34,515 + GFF3528 0.48 +0.2
34,516 - GFF3528 0.48 -1.4
34,603 - GFF3528 0.54 +0.1
34,603 - GFF3528 0.54 -0.4
34,603 - GFF3528 0.54 -0.1
34,603 - GFF3528 0.54 +0.1
34,605 + GFF3528 0.54 -0.7
35,086 - GFF3528 0.87 -0.5
35,097 + GFF3528 0.88 -1.0
35,097 + GFF3528 0.88 -1.0
35,097 + GFF3528 0.88 -0.3
35,097 + GFF3528 0.88 -0.5
35,098 - GFF3528 0.88 +0.5
35,098 - GFF3528 0.88 -0.4
35,098 - GFF3528 0.88 -1.5
35,154 + +0.0
35,154 + -0.8
35,154 + -0.9
35,154 + -1.0
35,154 + -1.4
35,155 - +0.6
35,155 - -0.4
35,155 - -1.4
35,155 - -0.6
35,160 + -1.7
35,160 + +0.1
35,160 + +0.3
35,160 + +1.6
35,160 + +0.3
35,161 - -1.1
35,161 - +0.1
35,161 - -0.7
35,161 - -0.7
35,208 + -1.0
35,208 + -0.6
35,208 + -0.6
35,208 + -1.6
35,208 + -0.3
35,209 - -1.5
35,209 - -0.1
35,209 - -0.0
35,209 - +2.0
35,209 - -0.8
35,389 + -0.4
35,389 + -1.0
35,389 + -1.1
35,390 - +0.6
35,390 - -1.8
35,770 + GFF3529 0.40 -1.0
35,770 + GFF3529 0.40 -0.9
35,770 + GFF3529 0.40 -0.7
35,771 - GFF3529 0.40 -0.3
35,771 - GFF3529 0.40 -0.7
35,771 - GFF3529 0.40 -1.6
35,771 - GFF3529 0.40 -1.4
35,771 - GFF3529 0.40 -1.5
35,797 + GFF3529 0.43 -0.6
35,803 + GFF3529 0.43 -1.8
35,803 + GFF3529 0.43 +0.1
35,804 - GFF3529 0.44 -1.4
35,804 - GFF3529 0.44 -1.3
35,815 + GFF3529 0.45 -0.2
35,816 - GFF3529 0.45 -0.4
35,854 + GFF3529 0.48 -0.5
35,855 - GFF3529 0.48 +2.0
35,947 + GFF3529 0.57 -0.2
35,947 + GFF3529 0.57 -0.1
35,947 + GFF3529 0.57 +1.1
35,947 + GFF3529 0.57 -0.8
35,948 - GFF3529 0.57 -0.2
36,028 + GFF3529 0.64 -0.6
36,028 + GFF3529 0.64 -0.6
36,028 + GFF3529 0.64 -0.8
36,029 - GFF3529 0.64 -0.7
36,029 - GFF3529 0.64 -1.0
36,031 + GFF3529 0.65 +0.6
36,031 + GFF3529 0.65 +0.1
36,031 + GFF3529 0.65 -0.5
36,031 + GFF3529 0.65 -0.8
36,032 - GFF3529 0.65 -0.3
36,032 - GFF3529 0.65 +1.0
36,032 - GFF3529 0.65 -0.9
36,032 - GFF3529 0.65 -1.2
36,032 - GFF3529 0.65 +0.1
36,154 + GFF3529 0.76 +0.7
36,154 + GFF3529 0.76 -0.4
36,154 + GFF3529 0.76 -0.6
36,155 - GFF3529 0.76 +2.0

Or see this region's nucleotide sequence