Strain Fitness in Variovorax sp. SCN45 around GFF3502

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3501 and GFF3502 are separated by 19 nucleotidesGFF3502 and GFF3503 are separated by 140 nucleotides GFF3501 - Putative short-chain dehydrogenase, at 6,006 to 6,770 GFF3501 GFF3502 - hypothetical protein, at 6,790 to 7,047 GFF3502 GFF3503 - Subclass B3 beta-lactamase (EC 3.5.2.6), at 7,188 to 8,198 GFF3503 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.967 kb on + strandat 5.980 kb on + strandat 5.980 kb on + strandat 5.981 kb on - strandat 5.981 kb on - strandat 5.981 kb on - strandat 6.711 kb on + strandat 6.823 kb on + strand, within GFF3502at 6.823 kb on + strand, within GFF3502at 6.823 kb on + strand, within GFF3502at 6.823 kb on + strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.824 kb on - strand, within GFF3502at 6.896 kb on - strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.922 kb on + strand, within GFF3502at 6.923 kb on - strand, within GFF3502at 6.923 kb on - strand, within GFF3502at 6.937 kb on + strand, within GFF3502at 6.938 kb on - strand, within GFF3502at 7.105 kb on + strandat 7.105 kb on + strandat 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.417 kb on + strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.418 kb on - strand, within GFF3503at 7.552 kb on + strand, within GFF3503at 7.552 kb on + strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.553 kb on - strand, within GFF3503at 7.604 kb on - strand, within GFF3503at 7.705 kb on + strand, within GFF3503at 7.706 kb on - strand, within GFF3503at 7.720 kb on + strand, within GFF3503at 7.721 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.736 kb on - strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.768 kb on + strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.769 kb on - strand, within GFF3503at 7.918 kb on + strand, within GFF3503at 7.918 kb on + strand, within GFF3503at 7.919 kb on - strand, within GFF3503at 7.919 kb on - strand, within GFF3503at 7.919 kb on - strand, within GFF3503

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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5,967 + +1.2
5,980 + -0.1
5,980 + -0.8
5,981 - -0.9
5,981 - -0.8
5,981 - -0.5
6,711 + +0.2
6,823 + GFF3502 0.13 -0.4
6,823 + GFF3502 0.13 +0.1
6,823 + GFF3502 0.13 -0.4
6,823 + GFF3502 0.13 -2.1
6,824 - GFF3502 0.13 +0.5
6,824 - GFF3502 0.13 -0.9
6,824 - GFF3502 0.13 -1.8
6,824 - GFF3502 0.13 -0.3
6,824 - GFF3502 0.13 -0.7
6,824 - GFF3502 0.13 -0.1
6,824 - GFF3502 0.13 -0.0
6,824 - GFF3502 0.13 +0.5
6,896 - GFF3502 0.41 -0.4
6,922 + GFF3502 0.51 +0.1
6,922 + GFF3502 0.51 -0.4
6,922 + GFF3502 0.51 -1.3
6,922 + GFF3502 0.51 -1.4
6,922 + GFF3502 0.51 -0.5
6,923 - GFF3502 0.52 -0.9
6,923 - GFF3502 0.52 -0.9
6,937 + GFF3502 0.57 -0.6
6,938 - GFF3502 0.57 +0.4
7,105 + -0.4
7,105 + -0.3
7,417 + GFF3503 0.23 -0.4
7,417 + GFF3503 0.23 -0.7
7,417 + GFF3503 0.23 +0.7
7,417 + GFF3503 0.23 -0.6
7,417 + GFF3503 0.23 +1.2
7,417 + GFF3503 0.23 +1.2
7,417 + GFF3503 0.23 +1.5
7,417 + GFF3503 0.23 -1.2
7,417 + GFF3503 0.23 +0.6
7,417 + GFF3503 0.23 -0.5
7,418 - GFF3503 0.23 -1.5
7,418 - GFF3503 0.23 +0.4
7,418 - GFF3503 0.23 -1.0
7,418 - GFF3503 0.23 +0.8
7,418 - GFF3503 0.23 +0.0
7,418 - GFF3503 0.23 -0.6
7,418 - GFF3503 0.23 -0.2
7,418 - GFF3503 0.23 -1.2
7,418 - GFF3503 0.23 -0.1
7,418 - GFF3503 0.23 -0.0
7,418 - GFF3503 0.23 +0.6
7,418 - GFF3503 0.23 -0.0
7,552 + GFF3503 0.36 -0.2
7,552 + GFF3503 0.36 -0.7
7,553 - GFF3503 0.36 +0.1
7,553 - GFF3503 0.36 -0.4
7,553 - GFF3503 0.36 +0.1
7,553 - GFF3503 0.36 -1.3
7,553 - GFF3503 0.36 +0.3
7,604 - GFF3503 0.41 -0.9
7,705 + GFF3503 0.51 +0.1
7,706 - GFF3503 0.51 -0.3
7,720 + GFF3503 0.53 +2.3
7,721 - GFF3503 0.53 -0.2
7,736 - GFF3503 0.54 -1.7
7,736 - GFF3503 0.54 -0.6
7,736 - GFF3503 0.54 +0.5
7,768 + GFF3503 0.57 -0.3
7,768 + GFF3503 0.57 -1.0
7,768 + GFF3503 0.57 -0.2
7,768 + GFF3503 0.57 -1.2
7,769 - GFF3503 0.57 -0.5
7,769 - GFF3503 0.57 +0.1
7,769 - GFF3503 0.57 -0.1
7,918 + GFF3503 0.72 -1.2
7,918 + GFF3503 0.72 -0.9
7,919 - GFF3503 0.72 -1.8
7,919 - GFF3503 0.72 -0.6
7,919 - GFF3503 0.72 +0.4

Or see this region's nucleotide sequence