Strain Fitness in Variovorax sp. SCN45 around GFF3422

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3421 and GFF3422 are separated by 31 nucleotidesGFF3422 and GFF3423 are separated by 8 nucleotides GFF3421 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 244,385 to 246,388 GFF3421 GFF3422 - Lipoprotein-related protein, at 246,420 to 246,842 GFF3422 GFF3423 - Adenylate cyclase (EC 4.6.1.1), at 246,851 to 248,785 GFF3423 Position (kb) 246 247Strain fitness (log2 ratio) -2 -1 0 1 2at 245.442 kb on + strand, within GFF3421at 245.442 kb on + strand, within GFF3421at 245.442 kb on + strand, within GFF3421at 245.442 kb on + strand, within GFF3421at 245.442 kb on + strand, within GFF3421at 245.442 kb on + strand, within GFF3421at 245.443 kb on - strand, within GFF3421at 245.443 kb on - strand, within GFF3421at 245.499 kb on - strand, within GFF3421at 245.850 kb on - strand, within GFF3421at 245.850 kb on - strand, within GFF3421at 245.850 kb on - strand, within GFF3421at 245.891 kb on + strand, within GFF3421at 245.892 kb on - strand, within GFF3421at 245.966 kb on + strand, within GFF3421at 245.966 kb on + strand, within GFF3421at 245.967 kb on - strand, within GFF3421at 245.967 kb on - strand, within GFF3421at 245.967 kb on - strand, within GFF3421at 246.026 kb on + strand, within GFF3421at 246.026 kb on + strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.027 kb on - strand, within GFF3421at 246.083 kb on + strand, within GFF3421at 246.101 kb on + strand, within GFF3421at 246.101 kb on + strand, within GFF3421at 246.101 kb on + strand, within GFF3421at 246.101 kb on + strand, within GFF3421at 246.101 kb on + strand, within GFF3421at 246.101 kb on + strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.102 kb on - strand, within GFF3421at 246.353 kb on + strandat 246.353 kb on + strandat 246.353 kb on + strandat 246.353 kb on + strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.354 kb on - strandat 246.386 kb on + strandat 246.407 kb on + strandat 246.408 kb on - strandat 246.664 kb on - strand, within GFF3422at 246.709 kb on - strand, within GFF3422at 246.709 kb on - strand, within GFF3422at 246.709 kb on - strand, within GFF3422at 246.768 kb on + strand, within GFF3422at 246.768 kb on + strand, within GFF3422at 246.870 kb on + strandat 246.870 kb on + strandat 247.047 kb on + strand, within GFF3423at 247.048 kb on - strand, within GFF3423at 247.048 kb on - strand, within GFF3423at 247.203 kb on + strand, within GFF3423at 247.203 kb on + strand, within GFF3423at 247.203 kb on + strand, within GFF3423at 247.204 kb on - strand, within GFF3423at 247.204 kb on - strand, within GFF3423at 247.317 kb on + strand, within GFF3423at 247.317 kb on + strand, within GFF3423at 247.317 kb on + strand, within GFF3423at 247.318 kb on - strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.803 kb on + strand, within GFF3423at 247.804 kb on - strand, within GFF3423at 247.804 kb on - strand, within GFF3423at 247.818 kb on + strand, within GFF3423at 247.819 kb on - strand, within GFF3423at 247.819 kb on - strand, within GFF3423

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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245,442 + GFF3421 0.53 -0.2
245,442 + GFF3421 0.53 -0.0
245,442 + GFF3421 0.53 +0.6
245,442 + GFF3421 0.53 +0.1
245,442 + GFF3421 0.53 -0.6
245,442 + GFF3421 0.53 -0.5
245,443 - GFF3421 0.53 -0.6
245,443 - GFF3421 0.53 -0.9
245,499 - GFF3421 0.56 +0.1
245,850 - GFF3421 0.73 -0.7
245,850 - GFF3421 0.73 -0.5
245,850 - GFF3421 0.73 +0.5
245,891 + GFF3421 0.75 -1.7
245,892 - GFF3421 0.75 -0.6
245,966 + GFF3421 0.79 -0.1
245,966 + GFF3421 0.79 +0.0
245,967 - GFF3421 0.79 -1.4
245,967 - GFF3421 0.79 -0.5
245,967 - GFF3421 0.79 -0.6
246,026 + GFF3421 0.82 +0.7
246,026 + GFF3421 0.82 -0.3
246,027 - GFF3421 0.82 -0.6
246,027 - GFF3421 0.82 -1.4
246,027 - GFF3421 0.82 +1.1
246,027 - GFF3421 0.82 -0.3
246,027 - GFF3421 0.82 -0.7
246,027 - GFF3421 0.82 +0.1
246,027 - GFF3421 0.82 +0.3
246,027 - GFF3421 0.82 -1.3
246,027 - GFF3421 0.82 -0.5
246,027 - GFF3421 0.82 +1.0
246,083 + GFF3421 0.85 +0.4
246,101 + GFF3421 0.86 -0.2
246,101 + GFF3421 0.86 +0.3
246,101 + GFF3421 0.86 +0.5
246,101 + GFF3421 0.86 -1.9
246,101 + GFF3421 0.86 -2.7
246,101 + GFF3421 0.86 -0.2
246,102 - GFF3421 0.86 +0.7
246,102 - GFF3421 0.86 +1.0
246,102 - GFF3421 0.86 +0.1
246,102 - GFF3421 0.86 -0.5
246,102 - GFF3421 0.86 -1.4
246,102 - GFF3421 0.86 -0.8
246,102 - GFF3421 0.86 -0.3
246,353 + +0.7
246,353 + -0.2
246,353 + -0.0
246,353 + +0.4
246,354 - +0.4
246,354 - +0.8
246,354 - -0.1
246,354 - -0.2
246,354 - -1.6
246,354 - +1.0
246,354 - +0.0
246,354 - -1.2
246,354 - -0.3
246,386 + +0.2
246,407 + -0.5
246,408 - +0.1
246,664 - GFF3422 0.58 +0.7
246,709 - GFF3422 0.68 -1.7
246,709 - GFF3422 0.68 -1.5
246,709 - GFF3422 0.68 +0.2
246,768 + GFF3422 0.82 -0.7
246,768 + GFF3422 0.82 +0.3
246,870 + -2.6
246,870 + -0.3
247,047 + GFF3423 0.10 +0.5
247,048 - GFF3423 0.10 +0.1
247,048 - GFF3423 0.10 +1.4
247,203 + GFF3423 0.18 +0.4
247,203 + GFF3423 0.18 -1.0
247,203 + GFF3423 0.18 -1.0
247,204 - GFF3423 0.18 +2.0
247,204 - GFF3423 0.18 -0.2
247,317 + GFF3423 0.24 -0.3
247,317 + GFF3423 0.24 -0.0
247,317 + GFF3423 0.24 -0.5
247,318 - GFF3423 0.24 +0.8
247,803 + GFF3423 0.49 -2.1
247,803 + GFF3423 0.49 -0.2
247,803 + GFF3423 0.49 +0.3
247,803 + GFF3423 0.49 +1.0
247,803 + GFF3423 0.49 +0.1
247,803 + GFF3423 0.49 -0.2
247,803 + GFF3423 0.49 -0.3
247,804 - GFF3423 0.49 -1.0
247,804 - GFF3423 0.49 -0.5
247,818 + GFF3423 0.50 +0.2
247,819 - GFF3423 0.50 +0.3
247,819 - GFF3423 0.50 -0.8

Or see this region's nucleotide sequence