Strain Fitness in Variovorax sp. SCN45 around GFF3405

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3404 and GFF3405 are separated by 33 nucleotidesGFF3405 and GFF3406 are separated by 132 nucleotides GFF3404 - Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44), at 226,806 to 228,482 GFF3404 GFF3405 - Benzoyl-CoA oxygenase component B, at 228,516 to 229,943 GFF3405 GFF3406 - Benzoyl-CoA oxygenase component A, at 230,076 to 231,362 GFF3406 Position (kb) 228 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 227.604 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.018 kb on + strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.019 kb on - strand, within GFF3404at 228.132 kb on + strand, within GFF3404at 228.132 kb on + strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.133 kb on - strand, within GFF3404at 228.345 kb on - strandat 228.438 kb on + strandat 228.438 kb on + strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.439 kb on - strandat 228.532 kb on - strandat 228.532 kb on - strandat 228.532 kb on - strandat 228.532 kb on - strandat 228.666 kb on + strand, within GFF3405at 228.666 kb on + strand, within GFF3405at 228.666 kb on + strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.667 kb on - strand, within GFF3405at 228.735 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.933 kb on + strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.934 kb on - strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.996 kb on + strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 228.997 kb on - strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.143 kb on + strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.144 kb on - strand, within GFF3405at 229.381 kb on - strand, within GFF3405at 229.395 kb on + strand, within GFF3405at 229.395 kb on + strand, within GFF3405at 229.396 kb on - strand, within GFF3405at 229.396 kb on - strand, within GFF3405at 229.452 kb on + strand, within GFF3405at 229.453 kb on - strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.524 kb on + strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.525 kb on - strand, within GFF3405at 229.926 kb on + strandat 229.927 kb on - strandat 229.927 kb on - strandat 229.950 kb on + strandat 229.950 kb on + strandat 229.959 kb on - strandat 230.064 kb on + strandat 230.064 kb on + strandat 230.065 kb on - strandat 230.065 kb on - strandat 230.065 kb on - strandat 230.199 kb on + strandat 230.199 kb on + strandat 230.199 kb on + strandat 230.199 kb on + strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.200 kb on - strandat 230.301 kb on + strand, within GFF3406at 230.302 kb on - strand, within GFF3406at 230.302 kb on - strand, within GFF3406at 230.302 kb on - strand, within GFF3406at 230.479 kb on - strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.721 kb on + strand, within GFF3406at 230.760 kb on + strand, within GFF3406at 230.761 kb on - strand, within GFF3406at 230.761 kb on - strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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227,604 + GFF3404 0.48 -1.8
228,018 + GFF3404 0.72 -1.6
228,018 + GFF3404 0.72 -1.1
228,018 + GFF3404 0.72 -0.4
228,018 + GFF3404 0.72 -0.2
228,018 + GFF3404 0.72 +0.9
228,018 + GFF3404 0.72 +0.1
228,018 + GFF3404 0.72 +0.4
228,018 + GFF3404 0.72 -0.3
228,018 + GFF3404 0.72 +0.3
228,018 + GFF3404 0.72 -2.6
228,018 + GFF3404 0.72 -0.1
228,019 - GFF3404 0.72 -0.3
228,019 - GFF3404 0.72 +1.2
228,019 - GFF3404 0.72 -1.3
228,019 - GFF3404 0.72 +0.3
228,019 - GFF3404 0.72 +0.0
228,019 - GFF3404 0.72 -1.0
228,019 - GFF3404 0.72 -0.8
228,019 - GFF3404 0.72 -1.0
228,019 - GFF3404 0.72 -2.0
228,019 - GFF3404 0.72 -1.6
228,019 - GFF3404 0.72 -0.9
228,019 - GFF3404 0.72 -0.8
228,132 + GFF3404 0.79 +0.0
228,132 + GFF3404 0.79 -0.6
228,133 - GFF3404 0.79 -0.9
228,133 - GFF3404 0.79 +0.6
228,133 - GFF3404 0.79 -0.2
228,133 - GFF3404 0.79 -0.3
228,133 - GFF3404 0.79 -0.8
228,133 - GFF3404 0.79 +1.0
228,133 - GFF3404 0.79 -2.2
228,345 - -0.7
228,438 + +0.2
228,438 + -0.8
228,439 - -0.2
228,439 - -0.7
228,439 - -0.7
228,439 - -0.4
228,439 - -0.1
228,439 - +0.7
228,532 - -0.8
228,532 - -0.9
228,532 - +0.3
228,532 - +0.0
228,666 + GFF3405 0.11 +1.0
228,666 + GFF3405 0.11 -0.9
228,666 + GFF3405 0.11 -1.2
228,667 - GFF3405 0.11 -0.4
228,667 - GFF3405 0.11 -0.7
228,667 - GFF3405 0.11 -1.8
228,667 - GFF3405 0.11 -0.4
228,735 + GFF3405 0.15 -1.4
228,933 + GFF3405 0.29 -0.3
228,933 + GFF3405 0.29 -0.5
228,933 + GFF3405 0.29 -0.4
228,933 + GFF3405 0.29 +1.0
228,933 + GFF3405 0.29 +0.8
228,934 - GFF3405 0.29 -1.6
228,934 - GFF3405 0.29 +0.5
228,934 - GFF3405 0.29 -0.9
228,934 - GFF3405 0.29 -0.3
228,934 - GFF3405 0.29 -0.5
228,934 - GFF3405 0.29 -0.6
228,934 - GFF3405 0.29 -1.0
228,934 - GFF3405 0.29 -0.7
228,934 - GFF3405 0.29 +0.1
228,996 + GFF3405 0.34 +0.9
228,996 + GFF3405 0.34 -0.7
228,996 + GFF3405 0.34 -0.3
228,996 + GFF3405 0.34 -0.6
228,996 + GFF3405 0.34 -0.3
228,996 + GFF3405 0.34 -0.5
228,996 + GFF3405 0.34 -0.3
228,996 + GFF3405 0.34 +0.2
228,996 + GFF3405 0.34 -0.1
228,997 - GFF3405 0.34 +0.4
228,997 - GFF3405 0.34 -0.4
228,997 - GFF3405 0.34 -0.4
228,997 - GFF3405 0.34 -0.9
228,997 - GFF3405 0.34 -0.6
228,997 - GFF3405 0.34 +1.2
228,997 - GFF3405 0.34 +0.2
228,997 - GFF3405 0.34 -0.3
228,997 - GFF3405 0.34 -0.1
228,997 - GFF3405 0.34 +0.3
229,143 + GFF3405 0.44 -1.4
229,143 + GFF3405 0.44 -2.2
229,143 + GFF3405 0.44 +0.1
229,144 - GFF3405 0.44 +0.4
229,144 - GFF3405 0.44 -0.8
229,144 - GFF3405 0.44 -0.1
229,144 - GFF3405 0.44 -0.6
229,381 - GFF3405 0.61 -0.4
229,395 + GFF3405 0.62 +1.2
229,395 + GFF3405 0.62 -0.6
229,396 - GFF3405 0.62 -0.2
229,396 - GFF3405 0.62 -0.2
229,452 + GFF3405 0.66 -0.4
229,453 - GFF3405 0.66 -1.7
229,524 + GFF3405 0.71 +0.4
229,524 + GFF3405 0.71 -0.4
229,524 + GFF3405 0.71 -1.1
229,524 + GFF3405 0.71 -0.3
229,524 + GFF3405 0.71 +0.1
229,525 - GFF3405 0.71 -0.2
229,525 - GFF3405 0.71 -0.3
229,525 - GFF3405 0.71 -2.2
229,525 - GFF3405 0.71 -1.5
229,525 - GFF3405 0.71 -1.1
229,926 + -1.6
229,927 - +0.3
229,927 - -0.2
229,950 + -0.3
229,950 + +0.7
229,959 - -1.3
230,064 + -0.3
230,064 + +0.1
230,065 - -0.4
230,065 - -0.6
230,065 - +0.1
230,199 + -0.6
230,199 + -1.6
230,199 + -0.7
230,199 + -1.7
230,200 - -0.8
230,200 - -0.2
230,200 - +0.0
230,200 - +1.0
230,200 - +2.8
230,200 - +0.0
230,301 + GFF3406 0.17 -0.6
230,302 - GFF3406 0.18 -2.7
230,302 - GFF3406 0.18 +0.1
230,302 - GFF3406 0.18 +0.4
230,479 - GFF3406 0.31 +0.0
230,517 + GFF3406 0.34 -0.8
230,517 + GFF3406 0.34 -0.4
230,517 + GFF3406 0.34 -0.6
230,517 + GFF3406 0.34 -1.3
230,518 - GFF3406 0.34 -1.2
230,518 - GFF3406 0.34 -0.6
230,518 - GFF3406 0.34 +0.0
230,518 - GFF3406 0.34 -2.3
230,518 - GFF3406 0.34 -2.9
230,518 - GFF3406 0.34 -0.7
230,518 - GFF3406 0.34 -0.6
230,518 - GFF3406 0.34 -1.0
230,721 + GFF3406 0.50 -1.2
230,760 + GFF3406 0.53 -0.2
230,761 - GFF3406 0.53 -2.0
230,761 - GFF3406 0.53 -0.6
230,838 + GFF3406 0.59 -0.5
230,838 + GFF3406 0.59 -1.3
230,838 + GFF3406 0.59 -1.8
230,838 + GFF3406 0.59 +0.4
230,838 + GFF3406 0.59 -0.7
230,838 + GFF3406 0.59 -0.8
230,838 + GFF3406 0.59 +0.7
230,838 + GFF3406 0.59 -1.3
230,839 - GFF3406 0.59 -1.6
230,839 - GFF3406 0.59 -1.8
230,839 - GFF3406 0.59 -0.4
230,839 - GFF3406 0.59 -1.3
230,842 + GFF3406 0.60 -0.5
230,842 + GFF3406 0.60 -0.4
230,842 + GFF3406 0.60 -0.8
230,842 + GFF3406 0.60 -0.1
230,842 + GFF3406 0.60 -0.3
230,842 + GFF3406 0.60 +0.3
230,842 + GFF3406 0.60 -1.6
230,842 + GFF3406 0.60 -1.1
230,842 + GFF3406 0.60 +2.3
230,843 - GFF3406 0.60 -1.3
230,843 - GFF3406 0.60 -1.4
230,843 - GFF3406 0.60 -1.7
230,843 - GFF3406 0.60 -0.3
230,843 - GFF3406 0.60 -0.2
230,843 - GFF3406 0.60 -1.0
230,843 - GFF3406 0.60 -0.4
230,843 - GFF3406 0.60 -1.0
230,843 - GFF3406 0.60 -0.7
230,843 - GFF3406 0.60 -0.3
230,843 - GFF3406 0.60 -0.8
230,843 - GFF3406 0.60 -1.6
230,843 - GFF3406 0.60 -1.3
230,843 - GFF3406 0.60 -1.3
230,843 - GFF3406 0.60 -1.8
230,843 - GFF3406 0.60 -1.0

Or see this region's nucleotide sequence