Strain Fitness in Variovorax sp. SCN45 around GFF3380

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
200,050	+		GFF3379	0.53	-0.6
200,050	+		GFF3379	0.53	-0.8
200,051	-		GFF3379	0.53	-0.6
200,255	-		GFF3379	0.65	-0.8
200,420	-		GFF3379	0.74	+0.8
200,440	+		GFF3379	0.75	-0.8
200,440	+		GFF3379	0.75	-1.2
200,440	+		GFF3379	0.75	-1.7
200,441	-		GFF3379	0.75	-0.7
200,677	+		GFF3379	0.88	-0.5
200,677	+		GFF3379	0.88	-2.0
200,785	+				-0.3
200,785	+				-0.6
200,785	+				+0.6
200,786	-				-0.6
200,844	+				+0.5
200,942	-				-0.1
201,023	-				-0.5
201,023	-				+1.1
201,023	-				-0.3
201,023	-				-1.2
201,063	+				-0.4
201,454	+		GFF3380	0.46	-0.4
201,454	+		GFF3380	0.46	-1.2
201,686	+		GFF3380	0.70	-0.4
202,047	+				+1.1
202,047	+				+0.2
202,047	+				-0.3
202,047	+				-0.6
202,048	-				-0.3
202,048	-				+2.0
202,048	-				+0.2
202,048	-				-0.4
202,048	-				+1.3
202,048	-				-0.1
202,050	+				-0.4
202,050	+				+0.4
202,051	-				-0.8
202,233	+		GFF3381	0.22	-0.6
202,252	-		GFF3381	0.24	-0.0
202,342	-		GFF3381	0.31	-1.4
202,359	+		GFF3381	0.33	-0.4
202,360	-		GFF3381	0.33	-0.6
202,671	+		GFF3381	0.58	-0.2
202,671	+		GFF3381	0.58	+1.6
202,672	-		GFF3381	0.58	+0.4
202,737	+		GFF3381	0.64	+1.0
202,738	-		GFF3381	0.64	-0.5
202,738	-		GFF3381	0.64	+0.3
202,743	+		GFF3381	0.64	-0.3
202,743	+		GFF3381	0.64	-0.7
202,743	+		GFF3381	0.64	-0.5
202,755	+		GFF3381	0.65	+0.3
202,756	-		GFF3381	0.65	-1.0
202,809	+		GFF3381	0.70	+0.0
202,967	+		GFF3381	0.83	+0.4
202,967	+		GFF3381	0.83	+0.4