Strain Fitness in Variovorax sp. SCN45 around GFF3334

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3331 and GFF3332 are separated by 184 nucleotidesGFF3332 and GFF3333 are separated by 3 nucleotidesGFF3333 and GFF3334 are separated by 10 nucleotidesGFF3334 and GFF3335 are separated by 16 nucleotidesGFF3335 and GFF3336 are separated by 0 nucleotides GFF3331 - Glutathione S-transferase (EC 2.5.1.18), at 157,796 to 158,404 GFF3331 GFF3332 - UPF0391 membrane protein RPC_2356, at 158,589 to 158,774 GFF3332 GFF3333 - hypothetical protein, at 158,778 to 158,924 GFF3333 GFF3334 - hypothetical protein, at 158,935 to 159,822 GFF3334 GFF3335 - no description, at 159,839 to 159,997 GFF3335 GFF3336 - tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG, at 159,998 to 161,947 GFF3336 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.971 kb on + strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 157.972 kb on - strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.190 kb on + strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.191 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.254 kb on - strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.274 kb on + strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.275 kb on - strand, within GFF3331at 158.278 kb on - strand, within GFF3331at 158.391 kb on + strandat 158.391 kb on + strandat 158.392 kb on - strandat 158.392 kb on - strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.394 kb on + strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.395 kb on - strandat 158.412 kb on - strandat 158.412 kb on - strandat 158.412 kb on - strandat 158.464 kb on + strandat 158.464 kb on + strandat 158.496 kb on - strandat 158.496 kb on - strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.543 kb on + strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.544 kb on - strandat 158.598 kb on + strandat 158.598 kb on + strandat 158.599 kb on - strandat 158.968 kb on + strandat 158.968 kb on + strandat 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.151 kb on + strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.152 kb on - strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.241 kb on + strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.242 kb on - strand, within GFF3334at 159.260 kb on - strand, within GFF3334at 159.370 kb on + strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.371 kb on - strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.508 kb on + strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.509 kb on - strand, within GFF3334at 159.901 kb on + strand, within GFF3335at 159.901 kb on + strand, within GFF3335at 159.902 kb on - strand, within GFF3335at 159.941 kb on + strand, within GFF3335at 159.942 kb on - strand, within GFF3335

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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157,971 + GFF3331 0.29 -0.9
157,971 + GFF3331 0.29 -1.2
157,971 + GFF3331 0.29 +0.3
157,971 + GFF3331 0.29 -0.6
157,971 + GFF3331 0.29 +0.0
157,971 + GFF3331 0.29 +0.4
157,971 + GFF3331 0.29 -0.0
157,971 + GFF3331 0.29 -0.3
157,972 - GFF3331 0.29 -0.5
157,972 - GFF3331 0.29 +1.3
157,972 - GFF3331 0.29 -0.5
157,972 - GFF3331 0.29 -0.9
157,972 - GFF3331 0.29 +0.2
157,972 - GFF3331 0.29 -1.0
158,190 + GFF3331 0.65 +0.2
158,190 + GFF3331 0.65 -0.2
158,190 + GFF3331 0.65 -0.5
158,190 + GFF3331 0.65 +0.1
158,190 + GFF3331 0.65 +0.9
158,190 + GFF3331 0.65 -1.9
158,190 + GFF3331 0.65 -1.0
158,191 - GFF3331 0.65 -0.8
158,191 - GFF3331 0.65 -0.5
158,191 - GFF3331 0.65 -2.1
158,191 - GFF3331 0.65 -0.6
158,191 - GFF3331 0.65 -1.3
158,191 - GFF3331 0.65 +0.8
158,191 - GFF3331 0.65 +0.2
158,254 - GFF3331 0.75 -0.9
158,254 - GFF3331 0.75 +0.3
158,254 - GFF3331 0.75 -1.4
158,254 - GFF3331 0.75 -0.7
158,274 + GFF3331 0.78 +0.1
158,274 + GFF3331 0.78 +0.2
158,274 + GFF3331 0.78 -1.0
158,275 - GFF3331 0.79 -0.3
158,275 - GFF3331 0.79 -0.2
158,275 - GFF3331 0.79 +1.0
158,278 - GFF3331 0.79 +0.0
158,391 + +0.4
158,391 + -0.8
158,392 - -1.7
158,392 - +0.3
158,394 + +0.6
158,394 + +1.0
158,394 + -0.7
158,394 + -0.0
158,394 + +0.2
158,394 + -0.3
158,394 + -0.7
158,394 + +0.3
158,394 + -0.4
158,394 + -0.4
158,394 + +0.3
158,395 - -0.2
158,395 - +0.4
158,395 - -0.5
158,395 - -0.5
158,395 - +0.3
158,395 - +1.6
158,395 - -0.6
158,395 - +0.0
158,395 - -0.3
158,395 - +1.3
158,395 - -0.8
158,395 - +1.3
158,412 - -0.8
158,412 - -0.5
158,412 - -0.4
158,464 + +0.3
158,464 + -0.0
158,496 - -0.2
158,496 - -0.7
158,543 + +0.2
158,543 + -0.4
158,543 + +0.6
158,543 + -0.5
158,544 - -1.6
158,544 - -0.6
158,544 - +0.6
158,544 - +0.4
158,598 + +1.4
158,598 + -0.6
158,599 - +0.9
158,968 + +0.2
158,968 + -0.5
159,151 + GFF3334 0.24 -0.1
159,151 + GFF3334 0.24 -0.2
159,151 + GFF3334 0.24 -0.7
159,151 + GFF3334 0.24 -0.2
159,151 + GFF3334 0.24 -1.0
159,151 + GFF3334 0.24 -0.0
159,151 + GFF3334 0.24 +0.8
159,152 - GFF3334 0.24 -0.6
159,152 - GFF3334 0.24 -1.5
159,152 - GFF3334 0.24 -0.8
159,152 - GFF3334 0.24 -0.3
159,152 - GFF3334 0.24 +0.4
159,152 - GFF3334 0.24 -0.8
159,152 - GFF3334 0.24 +0.2
159,241 + GFF3334 0.34 -0.5
159,241 + GFF3334 0.34 +0.1
159,241 + GFF3334 0.34 +0.2
159,241 + GFF3334 0.34 -0.2
159,241 + GFF3334 0.34 +0.4
159,241 + GFF3334 0.34 -0.1
159,241 + GFF3334 0.34 +1.2
159,241 + GFF3334 0.34 -0.3
159,241 + GFF3334 0.34 -0.2
159,242 - GFF3334 0.35 +0.7
159,242 - GFF3334 0.35 -0.4
159,242 - GFF3334 0.35 -0.3
159,242 - GFF3334 0.35 +0.1
159,242 - GFF3334 0.35 +0.8
159,242 - GFF3334 0.35 +0.9
159,242 - GFF3334 0.35 -0.1
159,242 - GFF3334 0.35 -1.7
159,242 - GFF3334 0.35 +1.0
159,242 - GFF3334 0.35 -1.9
159,242 - GFF3334 0.35 -0.1
159,242 - GFF3334 0.35 +0.4
159,242 - GFF3334 0.35 -0.3
159,242 - GFF3334 0.35 -0.6
159,242 - GFF3334 0.35 -0.3
159,242 - GFF3334 0.35 -0.1
159,242 - GFF3334 0.35 -0.2
159,260 - GFF3334 0.37 +0.0
159,370 + GFF3334 0.49 +0.7
159,371 - GFF3334 0.49 -0.1
159,371 - GFF3334 0.49 -0.8
159,371 - GFF3334 0.49 -0.3
159,508 + GFF3334 0.65 +0.2
159,508 + GFF3334 0.65 +0.1
159,508 + GFF3334 0.65 +0.0
159,508 + GFF3334 0.65 +0.0
159,508 + GFF3334 0.65 +0.7
159,508 + GFF3334 0.65 +0.6
159,508 + GFF3334 0.65 +0.6
159,508 + GFF3334 0.65 +0.5
159,508 + GFF3334 0.65 -0.8
159,508 + GFF3334 0.65 -0.8
159,508 + GFF3334 0.65 +0.4
159,508 + GFF3334 0.65 -0.8
159,508 + GFF3334 0.65 +0.6
159,508 + GFF3334 0.65 +0.1
159,509 - GFF3334 0.65 -0.7
159,509 - GFF3334 0.65 +0.6
159,509 - GFF3334 0.65 +0.0
159,509 - GFF3334 0.65 +0.4
159,509 - GFF3334 0.65 +0.0
159,509 - GFF3334 0.65 +1.4
159,509 - GFF3334 0.65 +0.1
159,509 - GFF3334 0.65 -2.6
159,509 - GFF3334 0.65 +0.5
159,509 - GFF3334 0.65 +1.3
159,509 - GFF3334 0.65 -0.4
159,509 - GFF3334 0.65 +0.0
159,509 - GFF3334 0.65 +0.1
159,901 + GFF3335 0.39 -1.1
159,901 + GFF3335 0.39 -0.9
159,902 - GFF3335 0.40 +0.4
159,941 + GFF3335 0.64 -0.7
159,942 - GFF3335 0.65 -0.1

Or see this region's nucleotide sequence