Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3193 and GFF3194 are separated by 296 nucleotides GFF3194 and GFF3195 overlap by 4 nucleotides GFF3195 and GFF3196 are separated by 557 nucleotides
GFF3193 - no description, at 9,978 to 10,724
GFF3193
GFF3194 - no description, at 11,021 to 11,638
GFF3194
GFF3195 - hypothetical protein, at 11,635 to 13,614
GFF3195
GFF3196 - Metallophosphoesterase, at 14,172 to 15,098
GFF3196
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 10.641 kb on + strand, within GFF3193 at 10.641 kb on + strand, within GFF3193 at 10.642 kb on - strand, within GFF3193 at 10.642 kb on - strand, within GFF3193 at 10.663 kb on + strand at 10.669 kb on + strand at 10.669 kb on + strand at 10.669 kb on + strand at 10.670 kb on - strand at 10.746 kb on + strand at 10.746 kb on + strand at 10.746 kb on + strand at 10.928 kb on + strand at 10.929 kb on - strand at 10.938 kb on + strand at 10.976 kb on + strand at 10.978 kb on + strand at 10.978 kb on + strand at 10.978 kb on + strand at 10.978 kb on + strand at 10.979 kb on - strand at 10.979 kb on - strand at 10.979 kb on - strand at 10.979 kb on - strand at 11.017 kb on + strand at 11.018 kb on - strand at 11.018 kb on - strand at 11.018 kb on - strand at 11.079 kb on + strand at 11.079 kb on + strand at 11.080 kb on - strand at 11.080 kb on - strand at 11.084 kb on + strand, within GFF3194 at 11.084 kb on + strand, within GFF3194 at 11.135 kb on - strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.141 kb on + strand, within GFF3194 at 11.161 kb on - strand, within GFF3194 at 11.445 kb on + strand, within GFF3194 at 11.445 kb on + strand, within GFF3194 at 11.446 kb on - strand, within GFF3194 at 11.446 kb on - strand, within GFF3194 at 11.514 kb on + strand, within GFF3194 at 11.514 kb on + strand, within GFF3194 at 11.514 kb on + strand, within GFF3194 at 11.516 kb on + strand, within GFF3194 at 11.517 kb on - strand, within GFF3194 at 11.517 kb on - strand, within GFF3194 at 11.517 kb on - strand, within GFF3194 at 11.554 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.558 kb on + strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.559 kb on - strand, within GFF3194 at 11.681 kb on + strand at 11.681 kb on + strand at 11.681 kb on + strand at 11.682 kb on - strand at 11.682 kb on - strand at 11.814 kb on + strand at 11.815 kb on - strand at 11.815 kb on - strand at 11.885 kb on + strand, within GFF3195 at 11.913 kb on + strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.914 kb on - strand, within GFF3195 at 11.928 kb on + strand, within GFF3195 at 11.950 kb on + strand, within GFF3195 at 11.950 kb on + strand, within GFF3195 at 11.950 kb on + strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 11.951 kb on - strand, within GFF3195 at 12.056 kb on - strand, within GFF3195 at 12.056 kb on - strand, within GFF3195 at 12.094 kb on - strand, within GFF3195 at 12.094 kb on - strand, within GFF3195 at 12.168 kb on - strand, within GFF3195 at 12.212 kb on + strand, within GFF3195 at 12.212 kb on + strand, within GFF3195 at 12.212 kb on + strand, within GFF3195 at 12.213 kb on - strand, within GFF3195 at 12.213 kb on - strand, within GFF3195 at 12.230 kb on + strand, within GFF3195 at 12.231 kb on - strand, within GFF3195 at 12.231 kb on - strand, within GFF3195 at 12.231 kb on - strand, within GFF3195 at 12.295 kb on + strand, within GFF3195 at 12.295 kb on + strand, within GFF3195 at 12.296 kb on - strand, within GFF3195 at 12.296 kb on - strand, within GFF3195 at 12.322 kb on + strand, within GFF3195 at 12.380 kb on + strand, within GFF3195 at 12.380 kb on + strand, within GFF3195 at 12.380 kb on + strand, within GFF3195 at 12.381 kb on - strand, within GFF3195 at 12.424 kb on - strand, within GFF3195 at 12.598 kb on + strand, within GFF3195 at 12.598 kb on + strand, within GFF3195 at 12.599 kb on - strand, within GFF3195 at 12.599 kb on - strand, within GFF3195 at 12.716 kb on + strand, within GFF3195 at 12.716 kb on + strand, within GFF3195 at 12.717 kb on - strand, within GFF3195 at 12.717 kb on - strand, within GFF3195 at 12.842 kb on + strand, within GFF3195 at 12.843 kb on - strand, within GFF3195 at 12.843 kb on - strand, within GFF3195 at 12.843 kb on - strand, within GFF3195 at 12.915 kb on + strand, within GFF3195 at 12.915 kb on + strand, within GFF3195 at 12.915 kb on + strand, within GFF3195 at 12.925 kb on + strand, within GFF3195 at 12.925 kb on + strand, within GFF3195 at 12.925 kb on + strand, within GFF3195 at 12.926 kb on - strand, within GFF3195 at 12.926 kb on - strand, within GFF3195 at 12.934 kb on - strand, within GFF3195 at 12.934 kb on - strand, within GFF3195 at 12.941 kb on + strand, within GFF3195 at 13.037 kb on + strand, within GFF3195 at 13.037 kb on + strand, within GFF3195 at 13.037 kb on + strand, within GFF3195 at 13.038 kb on - strand, within GFF3195 at 13.038 kb on - strand, within GFF3195 at 13.038 kb on - strand, within GFF3195 at 13.219 kb on + strand, within GFF3195 at 13.219 kb on + strand, within GFF3195 at 13.220 kb on - strand, within GFF3195 at 13.289 kb on + strand, within GFF3195 at 13.290 kb on - strand, within GFF3195 at 13.290 kb on - strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.458 kb on - strand at 13.458 kb on - strand at 13.468 kb on - strand at 13.468 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.560 kb on - strand at 13.605 kb on + strand at 13.606 kb on - strand at 13.606 kb on - strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.635 kb on - strand at 13.732 kb on + strand at 13.733 kb on - strand at 13.733 kb on - strand at 13.735 kb on + strand at 13.812 kb on + strand at 13.812 kb on + strand at 13.813 kb on - strand at 13.823 kb on + strand at 13.823 kb on + strand at 13.823 kb on + strand at 13.824 kb on - strand at 13.824 kb on - strand at 13.873 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.926 kb on + strand at 13.927 kb on - strand at 13.927 kb on - strand at 13.927 kb on - strand at 13.936 kb on + strand at 13.972 kb on - strand at 13.972 kb on - strand at 13.972 kb on - strand at 13.972 kb on - strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.338 kb on + strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.421 kb on + strand, within GFF3196 at 14.490 kb on + strand, within GFF3196 at 14.491 kb on - strand, within GFF3196 at 14.491 kb on - strand, within GFF3196
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 10,641 + GFF3193 0.89 -0.4 10,641 + GFF3193 0.89 +0.0 10,642 - GFF3193 0.89 -0.4 10,642 - GFF3193 0.89 -0.5 10,663 + -0.3 10,669 + -0.5 10,669 + +0.3 10,669 + -0.4 10,670 - +0.0 10,746 + +0.2 10,746 + +0.7 10,746 + +0.0 10,928 + -0.5 10,929 - -0.1 10,938 + +0.8 10,976 + -1.1 10,978 + +0.4 10,978 + -0.5 10,978 + -0.1 10,978 + +1.0 10,979 - +0.1 10,979 - -0.4 10,979 - -0.5 10,979 - -0.3 11,017 + -0.2 11,018 - +0.5 11,018 - -0.2 11,018 - +0.1 11,079 + -0.7 11,079 + -0.5 11,080 - +0.0 11,080 - -1.3 11,084 + GFF3194 0.10 -0.7 11,084 + GFF3194 0.10 -1.0 11,135 - GFF3194 0.18 -1.0 11,141 + GFF3194 0.19 +0.4 11,141 + GFF3194 0.19 -1.6 11,141 + GFF3194 0.19 -0.1 11,141 + GFF3194 0.19 +0.2 11,161 - GFF3194 0.23 -0.3 11,445 + GFF3194 0.69 -0.7 11,445 + GFF3194 0.69 -0.8 11,446 - GFF3194 0.69 -0.8 11,446 - GFF3194 0.69 +0.6 11,514 + GFF3194 0.80 +1.4 11,514 + GFF3194 0.80 -0.1 11,514 + GFF3194 0.80 +1.0 11,516 + GFF3194 0.80 -0.4 11,517 - GFF3194 0.80 -0.9 11,517 - GFF3194 0.80 -0.1 11,517 - GFF3194 0.80 -0.7 11,554 + GFF3194 0.86 -1.0 11,558 + GFF3194 0.87 -1.4 11,558 + GFF3194 0.87 +0.4 11,558 + GFF3194 0.87 +0.1 11,558 + GFF3194 0.87 +0.3 11,558 + GFF3194 0.87 +0.1 11,558 + GFF3194 0.87 -0.0 11,559 - GFF3194 0.87 -0.3 11,559 - GFF3194 0.87 +0.3 11,559 - GFF3194 0.87 +0.1 11,559 - GFF3194 0.87 +0.7 11,681 + -0.4 11,681 + -0.6 11,681 + -0.7 11,682 - -0.4 11,682 - +0.4 11,814 + -0.6 11,815 - -1.1 11,815 - +0.9 11,885 + GFF3195 0.13 +0.0 11,913 + GFF3195 0.14 -1.8 11,914 - GFF3195 0.14 +0.5 11,914 - GFF3195 0.14 +0.0 11,914 - GFF3195 0.14 +0.4 11,914 - GFF3195 0.14 -1.5 11,914 - GFF3195 0.14 +0.2 11,928 + GFF3195 0.15 -0.5 11,950 + GFF3195 0.16 +0.2 11,950 + GFF3195 0.16 -1.6 11,950 + GFF3195 0.16 -0.3 11,951 - GFF3195 0.16 +0.0 11,951 - GFF3195 0.16 +0.1 11,951 - GFF3195 0.16 -0.5 11,951 - GFF3195 0.16 -0.7 11,951 - GFF3195 0.16 +0.6 12,056 - GFF3195 0.21 +0.7 12,056 - GFF3195 0.21 -0.4 12,094 - GFF3195 0.23 +0.3 12,094 - GFF3195 0.23 +0.2 12,168 - GFF3195 0.27 +0.7 12,212 + GFF3195 0.29 +0.5 12,212 + GFF3195 0.29 -1.0 12,212 + GFF3195 0.29 +0.5 12,213 - GFF3195 0.29 -0.4 12,213 - GFF3195 0.29 +0.4 12,230 + GFF3195 0.30 -0.4 12,231 - GFF3195 0.30 +0.7 12,231 - GFF3195 0.30 -1.4 12,231 - GFF3195 0.30 +0.3 12,295 + GFF3195 0.33 -0.1 12,295 + GFF3195 0.33 -1.1 12,296 - GFF3195 0.33 -0.1 12,296 - GFF3195 0.33 -0.0 12,322 + GFF3195 0.35 +0.5 12,380 + GFF3195 0.38 +0.5 12,380 + GFF3195 0.38 +1.0 12,380 + GFF3195 0.38 +0.3 12,381 - GFF3195 0.38 +1.0 12,424 - GFF3195 0.40 +1.3 12,598 + GFF3195 0.49 -1.4 12,598 + GFF3195 0.49 +0.1 12,599 - GFF3195 0.49 -0.3 12,599 - GFF3195 0.49 -0.5 12,716 + GFF3195 0.55 +0.3 12,716 + GFF3195 0.55 -0.1 12,717 - GFF3195 0.55 -0.1 12,717 - GFF3195 0.55 +1.0 12,842 + GFF3195 0.61 -0.4 12,843 - GFF3195 0.61 -1.1 12,843 - GFF3195 0.61 -0.5 12,843 - GFF3195 0.61 -0.4 12,915 + GFF3195 0.65 -1.6 12,915 + GFF3195 0.65 +0.0 12,915 + GFF3195 0.65 -0.1 12,925 + GFF3195 0.65 +0.4 12,925 + GFF3195 0.65 +0.2 12,925 + GFF3195 0.65 +0.1 12,926 - GFF3195 0.65 -0.1 12,926 - GFF3195 0.65 -1.1 12,934 - GFF3195 0.66 +0.1 12,934 - GFF3195 0.66 -0.5 12,941 + GFF3195 0.66 -0.5 13,037 + GFF3195 0.71 -1.7 13,037 + GFF3195 0.71 +0.3 13,037 + GFF3195 0.71 -0.3 13,038 - GFF3195 0.71 +0.8 13,038 - GFF3195 0.71 -2.0 13,038 - GFF3195 0.71 +0.6 13,219 + GFF3195 0.80 +0.2 13,219 + GFF3195 0.80 +0.0 13,220 - GFF3195 0.80 -0.9 13,289 + GFF3195 0.84 +0.0 13,290 - GFF3195 0.84 +0.7 13,290 - GFF3195 0.84 -2.2 13,353 + GFF3195 0.87 +0.6 13,353 + GFF3195 0.87 -1.0 13,353 + GFF3195 0.87 -0.3 13,354 - GFF3195 0.87 +0.4 13,354 - GFF3195 0.87 -0.7 13,354 - GFF3195 0.87 +0.0 13,354 - GFF3195 0.87 +0.7 13,354 - GFF3195 0.87 -0.1 13,354 - GFF3195 0.87 -0.1 13,354 - GFF3195 0.87 +1.2 13,458 - -0.6 13,458 - +0.1 13,468 - -0.4 13,468 - +0.9 13,558 - -0.5 13,558 - -1.0 13,558 - +1.6 13,558 - -0.8 13,559 + +0.9 13,559 + -1.8 13,559 + -0.4 13,560 - -1.4 13,605 + -0.9 13,606 - -1.0 13,606 - +0.8 13,634 + -1.0 13,634 + -0.7 13,634 + -0.3 13,634 + -0.1 13,635 - -1.1 13,732 + -0.6 13,733 - +0.8 13,733 - -0.1 13,735 + +0.3 13,812 + -1.0 13,812 + -0.4 13,813 - -0.0 13,823 + +0.6 13,823 + +1.4 13,823 + -0.0 13,824 - -0.1 13,824 - +2.6 13,873 + -0.4 13,923 + +0.2 13,923 + -1.0 13,923 + -1.3 13,923 + -0.2 13,923 + -0.5 13,923 + -1.0 13,923 + -0.9 13,923 + -0.1 13,923 + -0.5 13,923 + -0.7 13,924 - +0.2 13,924 - +0.3 13,924 - +0.1 13,924 - +0.6 13,924 - +0.3 13,926 + -1.8 13,927 - +1.0 13,927 - +0.7 13,927 - -1.2 13,936 + +1.0 13,972 - +0.5 13,972 - +0.0 13,972 - -0.3 13,972 - -2.0 14,055 + -0.5 14,055 + -1.9 14,055 + -0.5 14,055 + -0.1 14,055 + +0.5 14,055 + -0.3 14,056 - +0.4 14,056 - -0.5 14,056 - +0.1 14,056 - -0.7 14,056 - +0.2 14,056 - -0.5 14,056 - -1.1 14,056 - -0.2 14,056 - +0.5 14,056 - +0.0 14,338 + GFF3196 0.18 +2.0 14,339 - GFF3196 0.18 -0.1 14,339 - GFF3196 0.18 +0.8 14,339 - GFF3196 0.18 -0.1 14,339 - GFF3196 0.18 -0.3 14,339 - GFF3196 0.18 -0.6 14,339 - GFF3196 0.18 -1.9 14,339 - GFF3196 0.18 -1.6 14,421 + GFF3196 0.27 +0.5 14,490 + GFF3196 0.34 -1.6 14,491 - GFF3196 0.34 -0.9 14,491 - GFF3196 0.34 -0.5
Or see this region's nucleotide sequence