Strain Fitness in Variovorax sp. SCN45 around GFF3191

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3190 and GFF3191 are separated by 138 nucleotidesGFF3191 and GFF3192 overlap by 4 nucleotides GFF3190 - FIG01046500: hypothetical protein, at 6,448 to 7,791 GFF3190 GFF3191 - no description, at 7,930 to 8,658 GFF3191 GFF3192 - hypothetical protein, at 8,655 to 9,932 GFF3192 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.037 kb on + strand, within GFF3190at 7.037 kb on + strand, within GFF3190at 7.038 kb on - strand, within GFF3190at 7.038 kb on - strand, within GFF3190at 7.038 kb on - strand, within GFF3190at 7.038 kb on - strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.075 kb on + strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.076 kb on - strand, within GFF3190at 7.104 kb on + strand, within GFF3190at 7.104 kb on + strand, within GFF3190at 7.104 kb on + strand, within GFF3190at 7.105 kb on - strand, within GFF3190at 7.105 kb on - strand, within GFF3190at 7.318 kb on + strand, within GFF3190at 7.327 kb on - strand, within GFF3190at 7.327 kb on - strand, within GFF3190at 7.330 kb on + strand, within GFF3190at 7.330 kb on + strand, within GFF3190at 7.330 kb on + strand, within GFF3190at 7.330 kb on + strand, within GFF3190at 7.331 kb on - strand, within GFF3190at 7.331 kb on - strand, within GFF3190at 7.357 kb on + strand, within GFF3190at 7.358 kb on - strand, within GFF3190at 7.358 kb on - strand, within GFF3190at 7.525 kb on - strand, within GFF3190at 7.540 kb on + strand, within GFF3190at 7.540 kb on + strand, within GFF3190at 7.541 kb on - strand, within GFF3190at 7.541 kb on - strand, within GFF3190at 7.563 kb on + strand, within GFF3190at 7.563 kb on + strand, within GFF3190at 7.563 kb on + strand, within GFF3190at 7.564 kb on - strand, within GFF3190at 7.630 kb on + strand, within GFF3190at 7.630 kb on + strand, within GFF3190at 7.631 kb on - strand, within GFF3190at 7.708 kb on + strandat 7.709 kb on - strandat 7.927 kb on + strandat 7.927 kb on + strandat 7.928 kb on - strandat 7.928 kb on - strandat 7.943 kb on + strandat 7.943 kb on + strandat 7.944 kb on - strandat 7.944 kb on - strandat 7.944 kb on - strandat 8.111 kb on + strand, within GFF3191at 8.112 kb on - strand, within GFF3191at 8.144 kb on + strand, within GFF3191at 8.144 kb on + strand, within GFF3191at 8.251 kb on - strand, within GFF3191at 8.251 kb on - strand, within GFF3191at 8.251 kb on - strand, within GFF3191at 8.251 kb on - strand, within GFF3191at 8.339 kb on + strand, within GFF3191at 8.367 kb on + strand, within GFF3191at 8.367 kb on + strand, within GFF3191at 8.368 kb on - strand, within GFF3191at 8.368 kb on - strand, within GFF3191at 8.368 kb on - strand, within GFF3191at 8.408 kb on + strand, within GFF3191at 8.469 kb on + strand, within GFF3191at 8.469 kb on + strand, within GFF3191at 8.470 kb on - strand, within GFF3191at 8.470 kb on - strand, within GFF3191at 8.471 kb on + strand, within GFF3191at 8.471 kb on + strand, within GFF3191at 8.471 kb on + strand, within GFF3191at 8.471 kb on + strand, within GFF3191at 8.471 kb on + strand, within GFF3191at 8.472 kb on - strand, within GFF3191at 8.472 kb on - strand, within GFF3191at 8.472 kb on - strand, within GFF3191at 8.676 kb on - strandat 8.676 kb on - strandat 8.685 kb on + strandat 8.685 kb on + strandat 8.686 kb on - strandat 8.686 kb on - strandat 8.763 kb on + strandat 8.764 kb on - strandat 8.771 kb on + strandat 8.772 kb on - strandat 8.863 kb on + strand, within GFF3192at 8.881 kb on + strand, within GFF3192at 8.882 kb on - strand, within GFF3192at 9.037 kb on + strand, within GFF3192at 9.037 kb on + strand, within GFF3192at 9.038 kb on - strand, within GFF3192at 9.038 kb on - strand, within GFF3192at 9.038 kb on - strand, within GFF3192at 9.108 kb on + strand, within GFF3192at 9.108 kb on + strand, within GFF3192at 9.328 kb on + strand, within GFF3192at 9.328 kb on + strand, within GFF3192at 9.339 kb on + strand, within GFF3192at 9.339 kb on + strand, within GFF3192at 9.340 kb on - strand, within GFF3192at 9.410 kb on + strand, within GFF3192at 9.410 kb on + strand, within GFF3192at 9.410 kb on + strand, within GFF3192at 9.411 kb on - strand, within GFF3192at 9.477 kb on + strand, within GFF3192at 9.478 kb on - strand, within GFF3192at 9.478 kb on - strand, within GFF3192at 9.478 kb on - strand, within GFF3192at 9.551 kb on + strand, within GFF3192at 9.579 kb on + strand, within GFF3192at 9.579 kb on + strand, within GFF3192at 9.579 kb on + strand, within GFF3192at 9.580 kb on - strand, within GFF3192at 9.580 kb on - strand, within GFF3192at 9.580 kb on - strand, within GFF3192at 9.580 kb on - strand, within GFF3192at 9.608 kb on + strand, within GFF3192at 9.608 kb on + strand, within GFF3192

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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7,037 + GFF3190 0.44 -0.0
7,037 + GFF3190 0.44 -0.1
7,038 - GFF3190 0.44 +0.6
7,038 - GFF3190 0.44 -1.9
7,038 - GFF3190 0.44 -0.1
7,038 - GFF3190 0.44 -1.0
7,075 + GFF3190 0.47 +0.4
7,075 + GFF3190 0.47 +0.6
7,075 + GFF3190 0.47 -0.1
7,075 + GFF3190 0.47 +0.5
7,075 + GFF3190 0.47 -0.0
7,075 + GFF3190 0.47 +0.5
7,075 + GFF3190 0.47 +0.1
7,075 + GFF3190 0.47 +1.8
7,075 + GFF3190 0.47 +0.1
7,075 + GFF3190 0.47 -0.0
7,076 - GFF3190 0.47 -1.4
7,076 - GFF3190 0.47 +1.0
7,076 - GFF3190 0.47 -1.8
7,076 - GFF3190 0.47 -0.3
7,076 - GFF3190 0.47 -0.3
7,076 - GFF3190 0.47 -1.1
7,076 - GFF3190 0.47 +0.4
7,076 - GFF3190 0.47 +0.2
7,076 - GFF3190 0.47 -0.1
7,076 - GFF3190 0.47 -1.1
7,104 + GFF3190 0.49 -0.9
7,104 + GFF3190 0.49 -1.8
7,104 + GFF3190 0.49 -0.7
7,105 - GFF3190 0.49 +0.7
7,105 - GFF3190 0.49 -0.6
7,318 + GFF3190 0.65 -1.3
7,327 - GFF3190 0.65 -0.9
7,327 - GFF3190 0.65 -0.9
7,330 + GFF3190 0.66 +0.0
7,330 + GFF3190 0.66 -0.0
7,330 + GFF3190 0.66 +0.8
7,330 + GFF3190 0.66 +0.0
7,331 - GFF3190 0.66 -0.4
7,331 - GFF3190 0.66 -0.1
7,357 + GFF3190 0.68 +1.0
7,358 - GFF3190 0.68 -0.1
7,358 - GFF3190 0.68 +1.1
7,525 - GFF3190 0.80 -2.2
7,540 + GFF3190 0.81 +0.2
7,540 + GFF3190 0.81 -0.3
7,541 - GFF3190 0.81 -0.8
7,541 - GFF3190 0.81 -0.4
7,563 + GFF3190 0.83 -0.8
7,563 + GFF3190 0.83 +1.4
7,563 + GFF3190 0.83 +0.0
7,564 - GFF3190 0.83 +1.4
7,630 + GFF3190 0.88 -1.1
7,630 + GFF3190 0.88 -0.0
7,631 - GFF3190 0.88 -0.1
7,708 + +0.1
7,709 - -1.1
7,927 + +0.2
7,927 + -0.6
7,928 - +0.5
7,928 - -0.4
7,943 + -1.3
7,943 + -0.2
7,944 - -1.3
7,944 - -0.3
7,944 - -0.5
8,111 + GFF3191 0.25 +0.1
8,112 - GFF3191 0.25 -0.2
8,144 + GFF3191 0.29 +0.9
8,144 + GFF3191 0.29 -1.7
8,251 - GFF3191 0.44 +0.8
8,251 - GFF3191 0.44 -0.7
8,251 - GFF3191 0.44 +1.6
8,251 - GFF3191 0.44 +1.9
8,339 + GFF3191 0.56 -1.0
8,367 + GFF3191 0.60 +0.3
8,367 + GFF3191 0.60 -1.1
8,368 - GFF3191 0.60 +1.1
8,368 - GFF3191 0.60 +0.2
8,368 - GFF3191 0.60 +0.2
8,408 + GFF3191 0.66 +0.4
8,469 + GFF3191 0.74 -1.9
8,469 + GFF3191 0.74 +0.1
8,470 - GFF3191 0.74 +1.0
8,470 - GFF3191 0.74 +0.0
8,471 + GFF3191 0.74 +1.0
8,471 + GFF3191 0.74 -0.2
8,471 + GFF3191 0.74 -0.4
8,471 + GFF3191 0.74 -0.2
8,471 + GFF3191 0.74 +1.9
8,472 - GFF3191 0.74 -0.6
8,472 - GFF3191 0.74 -0.3
8,472 - GFF3191 0.74 +0.0
8,676 - +2.0
8,676 - +2.2
8,685 + +1.3
8,685 + -1.1
8,686 - -0.6
8,686 - -0.7
8,763 + +0.3
8,764 - +0.1
8,771 + +0.0
8,772 - -0.6
8,863 + GFF3192 0.16 -1.7
8,881 + GFF3192 0.18 +1.2
8,882 - GFF3192 0.18 -0.4
9,037 + GFF3192 0.30 +0.4
9,037 + GFF3192 0.30 -1.0
9,038 - GFF3192 0.30 +0.4
9,038 - GFF3192 0.30 -0.7
9,038 - GFF3192 0.30 -0.1
9,108 + GFF3192 0.35 -0.7
9,108 + GFF3192 0.35 -0.6
9,328 + GFF3192 0.53 -0.4
9,328 + GFF3192 0.53 +0.2
9,339 + GFF3192 0.54 +0.7
9,339 + GFF3192 0.54 -0.6
9,340 - GFF3192 0.54 +1.4
9,410 + GFF3192 0.59 +1.0
9,410 + GFF3192 0.59 +0.1
9,410 + GFF3192 0.59 -0.5
9,411 - GFF3192 0.59 -0.3
9,477 + GFF3192 0.64 +0.0
9,478 - GFF3192 0.64 -0.3
9,478 - GFF3192 0.64 +0.1
9,478 - GFF3192 0.64 +0.4
9,551 + GFF3192 0.70 -0.3
9,579 + GFF3192 0.72 +0.6
9,579 + GFF3192 0.72 -1.1
9,579 + GFF3192 0.72 -0.1
9,580 - GFF3192 0.72 +1.0
9,580 - GFF3192 0.72 -0.5
9,580 - GFF3192 0.72 -1.1
9,580 - GFF3192 0.72 -0.6
9,608 + GFF3192 0.75 +0.8
9,608 + GFF3192 0.75 +0.4

Or see this region's nucleotide sequence