Strain Fitness in Variovorax sp. SCN45 around GFF3188

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3187 and GFF3188 are separated by 79 nucleotidesGFF3188 and GFF3189 overlap by 11 nucleotides GFF3187 - hypothetical protein, at 2,043 to 4,073 GFF3187 GFF3188 - hypothetical protein, at 4,153 to 4,719 GFF3188 GFF3189 - hypothetical protein, at 4,709 to 5,812 GFF3189 Position (kb) 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 3.170 kb on - strand, within GFF3187at 3.170 kb on - strand, within GFF3187at 3.170 kb on - strand, within GFF3187at 3.253 kb on + strand, within GFF3187at 3.254 kb on - strand, within GFF3187at 3.254 kb on - strand, within GFF3187at 3.324 kb on + strand, within GFF3187at 3.369 kb on - strand, within GFF3187at 3.388 kb on + strand, within GFF3187at 3.389 kb on - strand, within GFF3187at 3.389 kb on - strand, within GFF3187at 3.389 kb on - strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.542 kb on + strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.543 kb on - strand, within GFF3187at 3.593 kb on + strand, within GFF3187at 3.594 kb on - strand, within GFF3187at 3.697 kb on + strand, within GFF3187at 3.698 kb on - strand, within GFF3187at 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.949 kb on + strandat 3.974 kb on + strandat 3.975 kb on - strandat 3.984 kb on - strandat 3.984 kb on - strandat 3.984 kb on - strandat 4.006 kb on - strandat 4.027 kb on + strandat 4.027 kb on + strandat 4.027 kb on + strandat 4.027 kb on + strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.028 kb on - strandat 4.145 kb on - strandat 4.186 kb on + strandat 4.264 kb on + strand, within GFF3188at 4.265 kb on - strand, within GFF3188at 4.295 kb on + strand, within GFF3188at 4.295 kb on + strand, within GFF3188at 4.295 kb on + strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.296 kb on - strand, within GFF3188at 4.336 kb on + strand, within GFF3188at 4.423 kb on + strand, within GFF3188at 4.423 kb on + strand, within GFF3188at 4.424 kb on - strand, within GFF3188at 4.424 kb on - strand, within GFF3188at 4.444 kb on - strand, within GFF3188at 4.483 kb on + strand, within GFF3188at 4.484 kb on - strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.485 kb on + strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.486 kb on - strand, within GFF3188at 4.520 kb on - strand, within GFF3188at 4.678 kb on + strandat 4.678 kb on + strandat 4.679 kb on - strandat 4.679 kb on - strandat 4.679 kb on - strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.737 kb on + strandat 4.738 kb on - strandat 4.768 kb on + strandat 4.768 kb on + strandat 4.768 kb on + strandat 4.769 kb on - strandat 4.769 kb on - strandat 4.809 kb on + strandat 4.810 kb on - strandat 4.965 kb on + strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.966 kb on - strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.975 kb on + strand, within GFF3189at 4.976 kb on - strand, within GFF3189at 4.978 kb on + strand, within GFF3189at 4.978 kb on + strand, within GFF3189at 4.979 kb on - strand, within GFF3189at 5.023 kb on + strand, within GFF3189at 5.023 kb on + strand, within GFF3189at 5.024 kb on - strand, within GFF3189at 5.024 kb on - strand, within GFF3189at 5.064 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.114 kb on + strand, within GFF3189at 5.115 kb on - strand, within GFF3189at 5.115 kb on - strand, within GFF3189at 5.115 kb on - strand, within GFF3189at 5.115 kb on - strand, within GFF3189at 5.115 kb on - strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.147 kb on + strand, within GFF3189at 5.148 kb on - strand, within GFF3189at 5.148 kb on - strand, within GFF3189at 5.184 kb on - strand, within GFF3189at 5.184 kb on - strand, within GFF3189at 5.246 kb on + strand, within GFF3189at 5.247 kb on - strand, within GFF3189at 5.275 kb on + strand, within GFF3189at 5.275 kb on + strand, within GFF3189at 5.275 kb on + strand, within GFF3189at 5.276 kb on - strand, within GFF3189at 5.276 kb on - strand, within GFF3189at 5.474 kb on + strand, within GFF3189at 5.474 kb on + strand, within GFF3189at 5.474 kb on + strand, within GFF3189at 5.474 kb on + strand, within GFF3189at 5.474 kb on + strand, within GFF3189at 5.474 kb on + strand, within GFF3189at 5.475 kb on - strand, within GFF3189at 5.475 kb on - strand, within GFF3189at 5.496 kb on + strand, within GFF3189at 5.497 kb on - strand, within GFF3189at 5.497 kb on - strand, within GFF3189at 5.534 kb on + strand, within GFF3189at 5.534 kb on + strand, within GFF3189at 5.535 kb on - strand, within GFF3189at 5.605 kb on + strand, within GFF3189at 5.620 kb on + strand, within GFF3189at 5.620 kb on + strand, within GFF3189at 5.620 kb on + strand, within GFF3189at 5.638 kb on + strand, within GFF3189at 5.677 kb on - strand, within GFF3189at 5.716 kb on + strandat 5.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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3,170 - GFF3187 0.55 -0.5
3,170 - GFF3187 0.55 -0.3
3,170 - GFF3187 0.55 -0.6
3,253 + GFF3187 0.60 +0.5
3,254 - GFF3187 0.60 -0.3
3,254 - GFF3187 0.60 -0.6
3,324 + GFF3187 0.63 +0.8
3,369 - GFF3187 0.65 -1.6
3,388 + GFF3187 0.66 -0.0
3,389 - GFF3187 0.66 +0.6
3,389 - GFF3187 0.66 -0.0
3,389 - GFF3187 0.66 +0.7
3,542 + GFF3187 0.74 -0.6
3,542 + GFF3187 0.74 -0.4
3,542 + GFF3187 0.74 +0.4
3,542 + GFF3187 0.74 -0.3
3,542 + GFF3187 0.74 -0.4
3,542 + GFF3187 0.74 +0.1
3,542 + GFF3187 0.74 -0.2
3,543 - GFF3187 0.74 -0.3
3,543 - GFF3187 0.74 -0.8
3,543 - GFF3187 0.74 -0.7
3,543 - GFF3187 0.74 -1.1
3,543 - GFF3187 0.74 -0.8
3,593 + GFF3187 0.76 -0.5
3,594 - GFF3187 0.76 -0.4
3,697 + GFF3187 0.81 -0.3
3,698 - GFF3187 0.81 +0.4
3,949 + +0.3
3,949 + +0.5
3,949 + +0.9
3,949 + -0.6
3,949 + -0.3
3,949 + +0.8
3,974 + -0.2
3,975 - +0.4
3,984 - +0.7
3,984 - -0.4
3,984 - +2.0
4,006 - -1.0
4,027 + -0.1
4,027 + -0.0
4,027 + -0.2
4,027 + -0.9
4,028 - -0.3
4,028 - +1.4
4,028 - +0.0
4,028 - +0.3
4,028 - -0.9
4,145 - +0.9
4,186 + +0.5
4,264 + GFF3188 0.20 +0.7
4,265 - GFF3188 0.20 +0.0
4,295 + GFF3188 0.25 +0.0
4,295 + GFF3188 0.25 +0.6
4,295 + GFF3188 0.25 -0.3
4,296 - GFF3188 0.25 -0.1
4,296 - GFF3188 0.25 +0.8
4,296 - GFF3188 0.25 +1.0
4,296 - GFF3188 0.25 +0.3
4,296 - GFF3188 0.25 +0.6
4,336 + GFF3188 0.32 +0.1
4,423 + GFF3188 0.48 -0.9
4,423 + GFF3188 0.48 -0.3
4,424 - GFF3188 0.48 +0.3
4,424 - GFF3188 0.48 -0.2
4,444 - GFF3188 0.51 -1.7
4,483 + GFF3188 0.58 -0.2
4,484 - GFF3188 0.58 -0.2
4,485 + GFF3188 0.59 -1.0
4,485 + GFF3188 0.59 +0.9
4,485 + GFF3188 0.59 -0.4
4,485 + GFF3188 0.59 -0.2
4,485 + GFF3188 0.59 +1.6
4,485 + GFF3188 0.59 +0.4
4,486 - GFF3188 0.59 -0.1
4,486 - GFF3188 0.59 -0.1
4,486 - GFF3188 0.59 -0.9
4,486 - GFF3188 0.59 +1.0
4,486 - GFF3188 0.59 -1.0
4,520 - GFF3188 0.65 -0.2
4,678 + +0.2
4,678 + -0.1
4,679 - -0.2
4,679 - +0.0
4,679 - +0.4
4,737 + -1.1
4,737 + -0.4
4,737 + +0.0
4,737 + -0.6
4,737 + +1.0
4,738 - -0.6
4,768 + +0.5
4,768 + -0.1
4,768 + -1.1
4,769 - -0.1
4,769 - -0.3
4,809 + +0.0
4,810 - -1.0
4,965 + GFF3189 0.23 +0.9
4,966 - GFF3189 0.23 +0.8
4,966 - GFF3189 0.23 -0.6
4,966 - GFF3189 0.23 -0.7
4,966 - GFF3189 0.23 -0.6
4,975 + GFF3189 0.24 +0.7
4,975 + GFF3189 0.24 -0.2
4,975 + GFF3189 0.24 +0.4
4,975 + GFF3189 0.24 -0.6
4,976 - GFF3189 0.24 -1.0
4,978 + GFF3189 0.24 +0.1
4,978 + GFF3189 0.24 +0.3
4,979 - GFF3189 0.24 +0.1
5,023 + GFF3189 0.28 -1.0
5,023 + GFF3189 0.28 -0.8
5,024 - GFF3189 0.29 +0.7
5,024 - GFF3189 0.29 +1.3
5,064 + GFF3189 0.32 +1.2
5,114 + GFF3189 0.37 -0.6
5,114 + GFF3189 0.37 +1.2
5,114 + GFF3189 0.37 -0.7
5,114 + GFF3189 0.37 -0.0
5,114 + GFF3189 0.37 +0.2
5,114 + GFF3189 0.37 +0.6
5,114 + GFF3189 0.37 +0.4
5,115 - GFF3189 0.37 -0.3
5,115 - GFF3189 0.37 -0.3
5,115 - GFF3189 0.37 -1.0
5,115 - GFF3189 0.37 -0.2
5,115 - GFF3189 0.37 -1.8
5,147 + GFF3189 0.40 -0.6
5,147 + GFF3189 0.40 -0.4
5,147 + GFF3189 0.40 -0.5
5,147 + GFF3189 0.40 -2.6
5,147 + GFF3189 0.40 -0.4
5,147 + GFF3189 0.40 -0.7
5,147 + GFF3189 0.40 +0.1
5,148 - GFF3189 0.40 -0.2
5,148 - GFF3189 0.40 +1.0
5,184 - GFF3189 0.43 -0.5
5,184 - GFF3189 0.43 +0.2
5,246 + GFF3189 0.49 -1.2
5,247 - GFF3189 0.49 -0.9
5,275 + GFF3189 0.51 -1.1
5,275 + GFF3189 0.51 -0.8
5,275 + GFF3189 0.51 -2.6
5,276 - GFF3189 0.51 +0.6
5,276 - GFF3189 0.51 +0.0
5,474 + GFF3189 0.69 -0.6
5,474 + GFF3189 0.69 +0.7
5,474 + GFF3189 0.69 +0.2
5,474 + GFF3189 0.69 -0.0
5,474 + GFF3189 0.69 -0.6
5,474 + GFF3189 0.69 -1.2
5,475 - GFF3189 0.69 -0.4
5,475 - GFF3189 0.69 -0.4
5,496 + GFF3189 0.71 -0.6
5,497 - GFF3189 0.71 -0.3
5,497 - GFF3189 0.71 +0.2
5,534 + GFF3189 0.75 +0.4
5,534 + GFF3189 0.75 +0.0
5,535 - GFF3189 0.75 -0.1
5,605 + GFF3189 0.81 -1.1
5,620 + GFF3189 0.83 +1.0
5,620 + GFF3189 0.83 -0.5
5,620 + GFF3189 0.83 +0.1
5,638 + GFF3189 0.84 +0.1
5,677 - GFF3189 0.88 -0.1
5,716 + +0.0
5,717 - +0.9

Or see this region's nucleotide sequence