Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3108 and GFF3109 are separated by 115 nucleotides GFF3109 and GFF3110 overlap by 4 nucleotides
GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350
GFF3108
GFF3109 - Methionine ABC transporter substrate-binding protein, at 536,466 to 537,299
GFF3109
GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645
GFF3110
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.887 kb on - strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 535.970 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.174 kb on + strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.175 kb on - strand, within GFF3108 at 536.189 kb on + strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.190 kb on - strand, within GFF3108 at 536.270 kb on + strand at 536.270 kb on + strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.271 kb on - strand at 536.273 kb on + strand at 536.273 kb on + strand at 536.274 kb on - strand at 536.274 kb on - strand at 536.274 kb on - strand at 536.366 kb on + strand at 536.367 kb on - strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.426 kb on + strand at 536.427 kb on - strand at 536.427 kb on - strand at 536.427 kb on - strand at 536.585 kb on + strand, within GFF3109 at 536.586 kb on - strand, within GFF3109 at 536.586 kb on - strand, within GFF3109 at 536.599 kb on - strand, within GFF3109 at 536.649 kb on + strand, within GFF3109 at 536.661 kb on + strand, within GFF3109 at 536.661 kb on + strand, within GFF3109 at 536.661 kb on + strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.662 kb on - strand, within GFF3109 at 536.745 kb on + strand, within GFF3109 at 536.745 kb on + strand, within GFF3109 at 536.745 kb on + strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.746 kb on - strand, within GFF3109 at 536.823 kb on + strand, within GFF3109 at 536.824 kb on - strand, within GFF3109 at 536.824 kb on - strand, within GFF3109 at 537.147 kb on + strand, within GFF3109 at 537.147 kb on + strand, within GFF3109 at 537.148 kb on - strand, within GFF3109 at 537.285 kb on + strand at 537.285 kb on + strand at 537.285 kb on + strand at 537.286 kb on - strand at 537.286 kb on - strand at 537.422 kb on + strand at 537.422 kb on + strand at 537.422 kb on + strand at 537.422 kb on + strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.423 kb on - strand at 537.605 kb on + strand, within GFF3110 at 537.605 kb on + strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.606 kb on - strand, within GFF3110 at 537.617 kb on + strand, within GFF3110 at 537.617 kb on + strand, within GFF3110 at 537.617 kb on + strand, within GFF3110 at 537.618 kb on - strand, within GFF3110 at 537.618 kb on - strand, within GFF3110 at 537.618 kb on - strand, within GFF3110 at 537.753 kb on - strand, within GFF3110 at 537.874 kb on - strand, within GFF3110 at 538.046 kb on + strand, within GFF3110 at 538.046 kb on + strand, within GFF3110 at 538.046 kb on + strand, within GFF3110 at 538.047 kb on - strand, within GFF3110 at 538.196 kb on + strand, within GFF3110 at 538.196 kb on + strand, within GFF3110 at 538.197 kb on - strand, within GFF3110 at 538.197 kb on - strand, within GFF3110
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 535,887 - GFF3108 0.54 -1.2 535,970 + GFF3108 0.62 -2.4 535,970 + GFF3108 0.62 +0.2 535,970 + GFF3108 0.62 +0.1 535,970 + GFF3108 0.62 -1.4 535,970 + GFF3108 0.62 +0.0 535,970 + GFF3108 0.62 -0.8 536,174 + GFF3108 0.82 +0.5 536,174 + GFF3108 0.82 -0.2 536,174 + GFF3108 0.82 +0.2 536,174 + GFF3108 0.82 +0.3 536,174 + GFF3108 0.82 +0.6 536,174 + GFF3108 0.82 -0.8 536,174 + GFF3108 0.82 -0.9 536,174 + GFF3108 0.82 -0.9 536,175 - GFF3108 0.82 -1.0 536,175 - GFF3108 0.82 -0.1 536,175 - GFF3108 0.82 -1.7 536,189 + GFF3108 0.84 -0.3 536,190 - GFF3108 0.84 -0.7 536,190 - GFF3108 0.84 -0.4 536,190 - GFF3108 0.84 +0.1 536,270 + -0.0 536,270 + +1.3 536,271 - -1.4 536,271 - +1.3 536,271 - -0.6 536,271 - -1.9 536,273 + -0.4 536,273 + -0.9 536,274 - -0.5 536,274 - -0.2 536,274 - -0.5 536,366 + -1.8 536,367 - +1.2 536,426 + -0.4 536,426 + +0.8 536,426 + -0.4 536,426 + -0.0 536,426 + +0.3 536,427 - -0.0 536,427 - -0.2 536,427 - -0.8 536,585 + GFF3109 0.14 +0.2 536,586 - GFF3109 0.14 -1.5 536,586 - GFF3109 0.14 +0.3 536,599 - GFF3109 0.16 -1.5 536,649 + GFF3109 0.22 -0.2 536,661 + GFF3109 0.23 +0.6 536,661 + GFF3109 0.23 +0.8 536,661 + GFF3109 0.23 -0.0 536,662 - GFF3109 0.24 -0.6 536,662 - GFF3109 0.24 -0.7 536,662 - GFF3109 0.24 +1.5 536,662 - GFF3109 0.24 -0.3 536,662 - GFF3109 0.24 -0.0 536,662 - GFF3109 0.24 -1.1 536,662 - GFF3109 0.24 -0.6 536,745 + GFF3109 0.33 -0.2 536,745 + GFF3109 0.33 +1.0 536,745 + GFF3109 0.33 -1.1 536,746 - GFF3109 0.34 -0.7 536,746 - GFF3109 0.34 +0.7 536,746 - GFF3109 0.34 -0.5 536,746 - GFF3109 0.34 -0.5 536,823 + GFF3109 0.43 +0.0 536,824 - GFF3109 0.43 -0.6 536,824 - GFF3109 0.43 +0.2 537,147 + GFF3109 0.82 -0.2 537,147 + GFF3109 0.82 -0.4 537,148 - GFF3109 0.82 -2.3 537,285 + +1.2 537,285 + -0.2 537,285 + +0.0 537,286 - +0.5 537,286 - +0.3 537,422 + -0.2 537,422 + -0.7 537,422 + -0.2 537,422 + -0.8 537,423 - -0.3 537,423 - +0.6 537,423 - +0.1 537,423 - -0.1 537,423 - +0.8 537,423 - +0.1 537,605 + GFF3110 0.23 -0.2 537,605 + GFF3110 0.23 -0.8 537,606 - GFF3110 0.23 +0.2 537,606 - GFF3110 0.23 -0.4 537,606 - GFF3110 0.23 -0.2 537,606 - GFF3110 0.23 +1.3 537,606 - GFF3110 0.23 +0.3 537,606 - GFF3110 0.23 -0.9 537,606 - GFF3110 0.23 -0.7 537,606 - GFF3110 0.23 -0.5 537,617 + GFF3110 0.24 -0.7 537,617 + GFF3110 0.24 -0.0 537,617 + GFF3110 0.24 -0.3 537,618 - GFF3110 0.24 -0.3 537,618 - GFF3110 0.24 -0.1 537,618 - GFF3110 0.24 -0.9 537,753 - GFF3110 0.34 -1.9 537,874 - GFF3110 0.43 +0.6 538,046 + GFF3110 0.56 -0.3 538,046 + GFF3110 0.56 +0.4 538,046 + GFF3110 0.56 +2.1 538,047 - GFF3110 0.56 -0.6 538,196 + GFF3110 0.67 -0.1 538,196 + GFF3110 0.67 +0.0 538,197 - GFF3110 0.67 +0.2 538,197 - GFF3110 0.67 -1.7
Or see this region's nucleotide sequence