Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3052 and GFF3053 overlap by 4 nucleotides GFF3053 and GFF3054 overlap by 4 nucleotides
GFF3052 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 486,386 to 487,369
GFF3052
GFF3053 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 487,366 to 488,025
GFF3053
GFF3054 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 488,022 to 489,374
GFF3054
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.789 kb on + strand, within GFF3052 at 486.789 kb on + strand, within GFF3052 at 486.789 kb on + strand, within GFF3052 at 486.789 kb on + strand, within GFF3052 at 486.790 kb on - strand, within GFF3052 at 486.790 kb on - strand, within GFF3052 at 487.613 kb on + strand, within GFF3053 at 487.637 kb on + strand, within GFF3053 at 487.638 kb on - strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 487.739 kb on + strand, within GFF3053 at 488.236 kb on + strand, within GFF3054 at 488.236 kb on + strand, within GFF3054 at 488.237 kb on - strand, within GFF3054 at 488.521 kb on + strand, within GFF3054 at 488.521 kb on + strand, within GFF3054 at 488.522 kb on - strand, within GFF3054 at 488.540 kb on - strand, within GFF3054 at 488.745 kb on + strand, within GFF3054 at 488.745 kb on + strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.746 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054 at 488.780 kb on - strand, within GFF3054
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 486,789 + GFF3052 0.41 -0.3 486,789 + GFF3052 0.41 -0.1 486,789 + GFF3052 0.41 +0.5 486,789 + GFF3052 0.41 -0.0 486,790 - GFF3052 0.41 -1.0 486,790 - GFF3052 0.41 +0.5 487,613 + GFF3053 0.37 -0.7 487,637 + GFF3053 0.41 +1.3 487,638 - GFF3053 0.41 -1.6 487,739 + GFF3053 0.57 -1.1 487,739 + GFF3053 0.57 +0.0 488,236 + GFF3054 0.16 -0.1 488,236 + GFF3054 0.16 +0.4 488,237 - GFF3054 0.16 -0.2 488,521 + GFF3054 0.37 -0.0 488,521 + GFF3054 0.37 -0.6 488,522 - GFF3054 0.37 +0.1 488,540 - GFF3054 0.38 -1.6 488,745 + GFF3054 0.53 -1.0 488,745 + GFF3054 0.53 -0.6 488,746 - GFF3054 0.54 -0.3 488,746 - GFF3054 0.54 +0.0 488,746 - GFF3054 0.54 +0.4 488,746 - GFF3054 0.54 +0.6 488,780 - GFF3054 0.56 -0.2 488,780 - GFF3054 0.56 -1.8 488,780 - GFF3054 0.56 +1.8
Or see this region's nucleotide sequence