Strain Fitness in Variovorax sp. SCN45 around GFF3031

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3030 and GFF3031 are separated by 74 nucleotidesGFF3031 and GFF3032 are separated by 195 nucleotides GFF3030 - Uncharacterized protein ImpA, at 461,426 to 462,625 GFF3030 GFF3031 - hypothetical protein, at 462,700 to 464,118 GFF3031 GFF3032 - Two-component transcriptional response regulator, LuxR family, at 464,314 to 465,069 GFF3032 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -1 0 1 2at 462.314 kb on + strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.318 kb on + strand, within GFF3030at 462.318 kb on + strand, within GFF3030at 462.319 kb on - strand, within GFF3030at 462.319 kb on - strand, within GFF3030at 462.437 kb on + strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.464 kb on + strand, within GFF3030at 462.501 kb on - strand, within GFF3030at 462.694 kb on + strandat 462.694 kb on + strandat 462.699 kb on + strandat 462.699 kb on + strandat 462.699 kb on + strandat 462.699 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.731 kb on + strandat 462.732 kb on - strandat 462.732 kb on - strandat 462.732 kb on - strandat 462.732 kb on - strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.749 kb on - strandat 462.749 kb on - strandat 462.749 kb on - strandat 462.749 kb on - strandat 462.820 kb on + strandat 462.821 kb on - strandat 462.821 kb on - strandat 462.821 kb on - strandat 462.821 kb on - strandat 462.822 kb on - strandat 462.838 kb on - strandat 462.865 kb on + strand, within GFF3031at 462.997 kb on - strand, within GFF3031at 463.040 kb on + strand, within GFF3031at 463.040 kb on + strand, within GFF3031at 463.041 kb on - strand, within GFF3031at 463.041 kb on - strand, within GFF3031at 463.231 kb on + strand, within GFF3031at 463.232 kb on - strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.390 kb on - strand, within GFF3031at 463.498 kb on + strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.509 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.573 kb on + strand, within GFF3031at 463.574 kb on - strand, within GFF3031at 463.574 kb on - strand, within GFF3031at 463.687 kb on + strand, within GFF3031at 463.687 kb on + strand, within GFF3031at 463.687 kb on + strand, within GFF3031at 463.714 kb on + strand, within GFF3031at 463.715 kb on - strand, within GFF3031at 463.752 kb on + strand, within GFF3031at 463.859 kb on + strand, within GFF3031at 463.860 kb on - strand, within GFF3031at 463.889 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.893 kb on + strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.894 kb on - strand, within GFF3031at 463.899 kb on + strand, within GFF3031at 463.992 kb on + strandat 463.993 kb on - strandat 463.993 kb on - strandat 464.168 kb on + strandat 464.168 kb on + strandat 464.169 kb on - strandat 464.190 kb on + strandat 464.190 kb on + strandat 464.191 kb on - strandat 464.191 kb on - strandat 464.616 kb on - strand, within GFF3032at 464.689 kb on + strand, within GFF3032at 464.689 kb on + strand, within GFF3032at 464.689 kb on + strand, within GFF3032at 464.741 kb on + strand, within GFF3032at 464.741 kb on + strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032at 464.742 kb on - strand, within GFF3032

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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462,314 + GFF3030 0.74 -0.2
462,315 - GFF3030 0.74 -0.4
462,315 - GFF3030 0.74 -0.8
462,315 - GFF3030 0.74 +0.2
462,315 - GFF3030 0.74 -0.4
462,318 + GFF3030 0.74 -0.4
462,318 + GFF3030 0.74 +0.3
462,319 - GFF3030 0.74 +1.8
462,319 - GFF3030 0.74 +0.3
462,437 + GFF3030 0.84 +0.5
462,438 - GFF3030 0.84 +1.8
462,438 - GFF3030 0.84 -0.7
462,438 - GFF3030 0.84 -1.2
462,438 - GFF3030 0.84 -1.0
462,464 + GFF3030 0.86 -0.0
462,501 - GFF3030 0.90 -0.6
462,694 + -0.1
462,694 + -0.6
462,699 + +0.2
462,699 + -0.7
462,699 + -0.6
462,699 + +0.2
462,716 + -0.6
462,716 + -0.3
462,716 + -0.1
462,716 + +0.4
462,716 + -0.0
462,717 - +0.8
462,717 - -0.9
462,717 - -0.1
462,717 - +0.1
462,717 - -0.0
462,717 - -1.1
462,731 + +1.2
462,732 - -0.6
462,732 - -0.0
462,732 - +1.2
462,732 - -0.1
462,748 + -0.1
462,748 + -0.7
462,748 + -0.2
462,748 + -0.3
462,748 + -0.9
462,749 - -0.3
462,749 - +1.3
462,749 - -0.9
462,749 - -0.5
462,820 + -1.5
462,821 - +0.8
462,821 - +0.8
462,821 - +0.4
462,821 - -0.5
462,822 - -0.7
462,838 - -1.0
462,865 + GFF3031 0.12 -1.6
462,997 - GFF3031 0.21 -1.0
463,040 + GFF3031 0.24 -0.6
463,040 + GFF3031 0.24 -0.8
463,041 - GFF3031 0.24 -0.2
463,041 - GFF3031 0.24 +0.2
463,231 + GFF3031 0.37 +0.4
463,232 - GFF3031 0.37 +0.8
463,385 + GFF3031 0.48 +0.1
463,385 + GFF3031 0.48 -0.2
463,385 + GFF3031 0.48 +0.2
463,385 + GFF3031 0.48 +0.5
463,386 - GFF3031 0.48 -0.4
463,386 - GFF3031 0.48 +0.5
463,386 - GFF3031 0.48 -0.2
463,386 - GFF3031 0.48 -1.0
463,386 - GFF3031 0.48 -0.9
463,389 + GFF3031 0.49 +0.6
463,389 + GFF3031 0.49 +0.6
463,389 + GFF3031 0.49 -1.4
463,390 - GFF3031 0.49 +0.8
463,498 + GFF3031 0.56 -0.2
463,499 - GFF3031 0.56 -0.6
463,499 - GFF3031 0.56 +0.8
463,499 - GFF3031 0.56 -0.1
463,509 - GFF3031 0.57 -0.1
463,572 - GFF3031 0.61 -1.7
463,572 - GFF3031 0.61 -1.4
463,572 - GFF3031 0.61 +0.9
463,573 + GFF3031 0.62 +0.1
463,574 - GFF3031 0.62 -1.6
463,574 - GFF3031 0.62 -0.8
463,687 + GFF3031 0.70 +1.5
463,687 + GFF3031 0.70 -0.5
463,687 + GFF3031 0.70 -0.7
463,714 + GFF3031 0.71 +0.4
463,715 - GFF3031 0.72 +0.1
463,752 + GFF3031 0.74 -1.6
463,859 + GFF3031 0.82 -0.2
463,860 - GFF3031 0.82 +0.0
463,889 + GFF3031 0.84 +1.8
463,893 + GFF3031 0.84 +0.4
463,893 + GFF3031 0.84 -0.1
463,893 + GFF3031 0.84 +0.2
463,893 + GFF3031 0.84 -1.0
463,894 - GFF3031 0.84 -0.2
463,894 - GFF3031 0.84 -0.5
463,894 - GFF3031 0.84 +0.6
463,894 - GFF3031 0.84 -0.1
463,894 - GFF3031 0.84 +0.0
463,894 - GFF3031 0.84 +0.1
463,894 - GFF3031 0.84 -0.3
463,894 - GFF3031 0.84 -0.4
463,894 - GFF3031 0.84 +1.1
463,894 - GFF3031 0.84 +0.1
463,894 - GFF3031 0.84 +1.0
463,894 - GFF3031 0.84 +0.5
463,899 + GFF3031 0.84 -0.2
463,992 + +1.5
463,993 - +0.5
463,993 - -0.1
464,168 + -0.2
464,168 + +0.8
464,169 - -0.4
464,190 + +0.8
464,190 + -0.6
464,191 - +0.8
464,191 - -0.2
464,616 - GFF3032 0.40 -0.6
464,689 + GFF3032 0.50 +0.5
464,689 + GFF3032 0.50 -0.5
464,689 + GFF3032 0.50 -0.2
464,741 + GFF3032 0.56 -0.4
464,741 + GFF3032 0.56 -1.4
464,742 - GFF3032 0.57 +0.7
464,742 - GFF3032 0.57 +1.3
464,742 - GFF3032 0.57 +1.0
464,742 - GFF3032 0.57 +0.7
464,742 - GFF3032 0.57 -0.9

Or see this region's nucleotide sequence