Strain Fitness in Variovorax sp. SCN45 around GFF2967

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2965 and GFF2966 are separated by 4 nucleotidesGFF2966 and GFF2967 overlap by 8 nucleotidesGFF2967 and GFF2968 are separated by 36 nucleotidesGFF2968 and GFF2969 are separated by 11 nucleotides GFF2965 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 396,382 to 397,578 GFF2965 GFF2966 - Enoyl-CoA hydratase (EC 4.2.1.17), at 397,583 to 398,395 GFF2966 GFF2967 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 398,388 to 399,137 GFF2967 GFF2968 - MaoC-like dehydratase, at 399,174 to 400,043 GFF2968 GFF2969 - acyl-CoA synthetase (NDP forming type), at 400,055 to 402,211 GFF2969 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1at 397.409 kb on + strand, within GFF2965at 397.410 kb on - strand, within GFF2965at 397.410 kb on - strand, within GFF2965at 397.410 kb on - strand, within GFF2965at 397.410 kb on - strand, within GFF2965at 397.805 kb on + strand, within GFF2966at 398.395 kb on + strandat 398.395 kb on + strandat 398.396 kb on - strandat 398.396 kb on - strandat 398.396 kb on - strandat 398.542 kb on + strand, within GFF2967at 398.542 kb on + strand, within GFF2967at 398.542 kb on + strand, within GFF2967at 398.542 kb on + strand, within GFF2967at 398.542 kb on + strand, within GFF2967at 398.543 kb on - strand, within GFF2967at 398.543 kb on - strand, within GFF2967at 398.674 kb on + strand, within GFF2967at 398.675 kb on - strand, within GFF2967at 398.675 kb on - strand, within GFF2967at 398.675 kb on - strand, within GFF2967at 398.675 kb on - strand, within GFF2967at 398.675 kb on - strand, within GFF2967at 398.675 kb on - strand, within GFF2967at 398.880 kb on - strand, within GFF2967at 398.880 kb on - strand, within GFF2967at 398.880 kb on - strand, within GFF2967at 398.880 kb on - strand, within GFF2967at 399.344 kb on - strand, within GFF2968at 399.482 kb on - strand, within GFF2968at 399.901 kb on + strand, within GFF2968at 399.902 kb on - strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.907 kb on + strand, within GFF2968at 399.908 kb on - strand, within GFF2968at 399.908 kb on - strand, within GFF2968at 399.908 kb on - strand, within GFF2968at 399.961 kb on + strandat 399.961 kb on + strandat 399.961 kb on + strandat 399.962 kb on - strandat 399.962 kb on - strandat 399.983 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.985 kb on + strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 399.986 kb on - strandat 400.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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397,409 + GFF2965 0.86 -0.1
397,410 - GFF2965 0.86 +0.5
397,410 - GFF2965 0.86 -1.5
397,410 - GFF2965 0.86 -1.2
397,410 - GFF2965 0.86 -0.3
397,805 + GFF2966 0.27 -1.3
398,395 + -0.4
398,395 + -0.5
398,396 - +0.2
398,396 - -0.2
398,396 - +0.6
398,542 + GFF2967 0.21 -0.4
398,542 + GFF2967 0.21 -1.6
398,542 + GFF2967 0.21 +0.8
398,542 + GFF2967 0.21 +0.4
398,542 + GFF2967 0.21 +0.5
398,543 - GFF2967 0.21 -0.8
398,543 - GFF2967 0.21 +0.3
398,674 + GFF2967 0.38 +0.6
398,675 - GFF2967 0.38 +0.2
398,675 - GFF2967 0.38 -0.8
398,675 - GFF2967 0.38 +1.0
398,675 - GFF2967 0.38 +1.2
398,675 - GFF2967 0.38 +1.0
398,675 - GFF2967 0.38 -0.2
398,880 - GFF2967 0.66 -0.2
398,880 - GFF2967 0.66 -1.0
398,880 - GFF2967 0.66 -0.6
398,880 - GFF2967 0.66 +1.2
399,344 - GFF2968 0.20 -0.4
399,482 - GFF2968 0.35 +1.2
399,901 + GFF2968 0.84 +0.1
399,902 - GFF2968 0.84 -1.6
399,907 + GFF2968 0.84 -0.1
399,907 + GFF2968 0.84 -0.6
399,907 + GFF2968 0.84 +0.6
399,907 + GFF2968 0.84 +0.4
399,908 - GFF2968 0.84 -1.1
399,908 - GFF2968 0.84 -0.3
399,908 - GFF2968 0.84 -0.0
399,961 + +0.5
399,961 + +0.5
399,961 + -1.1
399,962 - +0.3
399,962 - -1.1
399,983 + -0.1
399,985 + +0.4
399,985 + +0.4
399,985 + -0.2
399,985 + -0.1
399,985 + -1.0
399,985 + +0.4
399,985 + +0.1
399,985 + -0.2
399,986 - +0.8
399,986 - -0.8
399,986 - -0.2
399,986 - +0.1
399,986 - -0.7
399,986 - -1.8
399,986 - -2.2
400,038 - +1.3

Or see this region's nucleotide sequence