Strain Fitness in Variovorax sp. SCN45 around GFF278

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF274 and GFF275 are separated by 74 nucleotidesGFF275 and GFF276 are separated by 206 nucleotidesGFF276 and GFF277 are separated by 42 nucleotidesGFF277 and GFF278 are separated by 17 nucleotidesGFF278 and GFF279 are separated by 7 nucleotides GFF274 - Probable RNA methyltransferase PA1839, at 310,502 to 311,548 GFF274 GFF275 - FIG00349534: hypothetical protein, at 311,623 to 311,880 GFF275 GFF276 - no description, at 312,087 to 312,257 GFF276 GFF277 - HD domain protein, at 312,300 to 312,482 GFF277 GFF278 - O-methyltransferase Rv0190, at 312,500 to 313,180 GFF278 GFF279 - Uncharacterized MFS-type transporter, at 313,188 to 314,573 GFF279 Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1 2 3at 311.564 kb on + strandat 311.565 kb on - strandat 311.565 kb on - strandat 311.839 kb on + strand, within GFF275at 311.839 kb on + strand, within GFF275at 311.839 kb on + strand, within GFF275at 311.840 kb on - strand, within GFF275at 311.882 kb on + strandat 311.883 kb on - strandat 311.883 kb on - strandat 311.883 kb on - strandat 311.883 kb on - strandat 311.883 kb on - strandat 311.883 kb on - strandat 311.896 kb on - strandat 311.938 kb on + strandat 311.938 kb on + strandat 311.939 kb on - strandat 311.959 kb on + strandat 311.959 kb on + strandat 311.960 kb on - strandat 311.960 kb on - strandat 311.960 kb on - strandat 311.960 kb on - strandat 311.960 kb on - strandat 311.982 kb on + strandat 311.982 kb on + strandat 311.982 kb on + strandat 311.983 kb on - strandat 312.088 kb on + strandat 312.088 kb on + strandat 312.088 kb on + strandat 312.088 kb on + strandat 312.089 kb on - strandat 312.089 kb on - strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.250 kb on + strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.251 kb on - strandat 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.352 kb on + strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.353 kb on - strand, within GFF277at 312.480 kb on + strandat 312.481 kb on - strandat 312.481 kb on - strandat 312.481 kb on - strandat 312.557 kb on + strandat 312.557 kb on + strandat 312.557 kb on + strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.558 kb on - strandat 312.732 kb on - strand, within GFF278at 312.732 kb on - strand, within GFF278at 312.732 kb on - strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.953 kb on + strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 312.954 kb on - strand, within GFF278at 313.179 kb on - strandat 313.513 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.546 kb on + strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.547 kb on - strand, within GFF279at 313.555 kb on + strand, within GFF279at 313.555 kb on + strand, within GFF279at 313.555 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.789 kb on + strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.790 kb on - strand, within GFF279at 313.854 kb on + strand, within GFF279at 313.855 kb on + strand, within GFF279at 313.855 kb on + strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279at 313.856 kb on - strand, within GFF279

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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311,564 + -0.4
311,565 - -0.3
311,565 - +0.4
311,839 + GFF275 0.84 -0.2
311,839 + GFF275 0.84 +0.0
311,839 + GFF275 0.84 -0.7
311,840 - GFF275 0.84 +0.3
311,882 + -0.8
311,883 - +0.4
311,883 - -0.2
311,883 - -0.6
311,883 - +1.1
311,883 - -0.9
311,883 - -0.2
311,896 - +0.7
311,938 + +1.4
311,938 + -0.2
311,939 - +1.4
311,959 + +0.4
311,959 + +1.1
311,960 - +0.9
311,960 - +0.1
311,960 - -0.5
311,960 - +0.0
311,960 - +0.2
311,982 + +0.3
311,982 + -0.5
311,982 + -0.5
311,983 - -0.0
312,088 + +1.1
312,088 + -2.2
312,088 + +0.4
312,088 + -0.3
312,089 - -1.4
312,089 - +1.0
312,250 + -0.2
312,250 + -0.4
312,250 + -0.6
312,250 + +0.7
312,250 + +0.1
312,250 + -0.9
312,251 - -0.9
312,251 - +0.2
312,251 - -0.2
312,251 - +0.6
312,251 - +0.8
312,251 - +2.2
312,251 - -0.7
312,251 - +0.1
312,352 + GFF277 0.28 +0.5
312,352 + GFF277 0.28 +0.5
312,352 + GFF277 0.28 +0.7
312,352 + GFF277 0.28 +0.4
312,352 + GFF277 0.28 +0.0
312,352 + GFF277 0.28 +0.6
312,352 + GFF277 0.28 -0.3
312,352 + GFF277 0.28 -0.3
312,352 + GFF277 0.28 +0.4
312,352 + GFF277 0.28 -0.3
312,352 + GFF277 0.28 -1.1
312,352 + GFF277 0.28 -0.2
312,352 + GFF277 0.28 +0.1
312,352 + GFF277 0.28 +0.2
312,352 + GFF277 0.28 +2.1
312,352 + GFF277 0.28 -0.4
312,352 + GFF277 0.28 -0.7
312,352 + GFF277 0.28 -1.3
312,352 + GFF277 0.28 +1.1
312,353 - GFF277 0.29 -0.5
312,353 - GFF277 0.29 -0.1
312,353 - GFF277 0.29 +0.8
312,353 - GFF277 0.29 -0.2
312,353 - GFF277 0.29 +0.1
312,353 - GFF277 0.29 +0.1
312,353 - GFF277 0.29 +0.6
312,353 - GFF277 0.29 +0.7
312,353 - GFF277 0.29 -1.6
312,353 - GFF277 0.29 +1.0
312,353 - GFF277 0.29 -1.4
312,353 - GFF277 0.29 +0.4
312,353 - GFF277 0.29 -0.4
312,353 - GFF277 0.29 -0.7
312,353 - GFF277 0.29 -0.3
312,353 - GFF277 0.29 +0.5
312,353 - GFF277 0.29 -0.0
312,480 + +0.5
312,481 - +0.4
312,481 - +1.1
312,481 - +3.7
312,557 + -0.0
312,557 + -0.7
312,557 + -0.3
312,558 - -0.5
312,558 - +0.1
312,558 - +0.2
312,558 - -0.9
312,558 - -0.2
312,558 - -0.1
312,558 - +2.4
312,732 - GFF278 0.34 +1.0
312,732 - GFF278 0.34 +0.4
312,732 - GFF278 0.34 +1.9
312,953 + GFF278 0.67 -0.1
312,953 + GFF278 0.67 +0.6
312,953 + GFF278 0.67 -0.7
312,953 + GFF278 0.67 -0.3
312,953 + GFF278 0.67 +0.0
312,954 - GFF278 0.67 +0.2
312,954 - GFF278 0.67 -0.1
312,954 - GFF278 0.67 -0.3
312,954 - GFF278 0.67 +0.8
312,954 - GFF278 0.67 -0.3
313,179 - +1.6
313,513 + GFF279 0.23 +0.1
313,546 + GFF279 0.26 +0.2
313,546 + GFF279 0.26 +0.2
313,546 + GFF279 0.26 -0.6
313,546 + GFF279 0.26 -0.6
313,547 - GFF279 0.26 +0.3
313,547 - GFF279 0.26 +0.2
313,547 - GFF279 0.26 -0.0
313,547 - GFF279 0.26 -0.2
313,555 + GFF279 0.26 -0.7
313,555 + GFF279 0.26 -0.9
313,555 + GFF279 0.26 -0.7
313,789 + GFF279 0.43 -0.9
313,789 + GFF279 0.43 +1.1
313,789 + GFF279 0.43 +0.3
313,789 + GFF279 0.43 +0.7
313,790 - GFF279 0.43 -0.5
313,790 - GFF279 0.43 -0.3
313,790 - GFF279 0.43 +1.1
313,854 + GFF279 0.48 +0.8
313,855 + GFF279 0.48 +0.5
313,855 + GFF279 0.48 -0.6
313,856 - GFF279 0.48 -0.2
313,856 - GFF279 0.48 -1.8
313,856 - GFF279 0.48 +0.2
313,856 - GFF279 0.48 +0.5
313,856 - GFF279 0.48 +0.6

Or see this region's nucleotide sequence