Strain Fitness in Variovorax sp. SCN45 around GFF2693

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
120,749	+		GFF2691	0.72	-0.3
120,749	+		GFF2691	0.72	+0.1
120,750	-		GFF2691	0.73	+0.4
120,782	+		GFF2691	0.77	+0.1
120,867	-				-1.9
120,875	+				+0.1
120,875	+				+0.1
120,876	-				-1.7
121,115	-		GFF2692	0.32	+0.3
121,237	+		GFF2692	0.53	-0.6
121,301	-		GFF2692	0.64	-0.8
121,351	+		GFF2692	0.73	-0.3
121,636	-		GFF2693	0.16	+1.3
121,636	-		GFF2693	0.16	+1.6
121,665	+		GFF2693	0.19	-0.9
121,665	+		GFF2693	0.19	-0.2
121,734	+		GFF2693	0.25	+0.5
121,734	+		GFF2693	0.25	+1.1
121,734	+		GFF2693	0.25	+0.3
121,735	-		GFF2693	0.25	+0.1
121,735	-		GFF2693	0.25	-0.8
121,896	+		GFF2693	0.41	+0.4
121,897	-		GFF2693	0.42	-0.0
122,304	+		GFF2693	0.82	+0.7
122,304	+		GFF2693	0.82	-0.6
122,305	-		GFF2693	0.82	+0.2
122,583	-				+0.8
122,753	+		GFF2694	0.26	+0.8
122,754	-		GFF2694	0.27	-0.5
122,832	-		GFF2694	0.34	+0.5
123,206	+		GFF2694	0.71	-0.6
123,206	+		GFF2694	0.71	-1.4
123,206	+		GFF2694	0.71	+0.6
123,206	+		GFF2694	0.71	-0.3
123,207	-		GFF2694	0.71	+0.0
123,207	-		GFF2694	0.71	-0.1
123,207	-		GFF2694	0.71	-0.7
123,207	-		GFF2694	0.71	-0.7