Strain Fitness in Variovorax sp. SCN45 around GFF2617

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
20,062	+				+0.3
20,073	+				-0.3
20,073	+				-0.2
20,074	-				-0.9
20,074	-				+1.1
20,074	-				+0.1
20,074	-				-1.2
20,081	+				-0.2
20,082	-				+1.4
20,108	+		GFF2615	0.16	+1.0
20,173	-		GFF2615	0.52	-0.1
20,296	-				+0.0
20,296	-				-0.1
20,411	+				-0.4
20,411	+				+1.3
20,411	+				-0.3
20,443	-				-0.6
20,524	+				-0.5
20,533	+				-0.5
20,593	+		GFF2616	0.13	-0.3
20,594	-		GFF2616	0.13	-1.7
20,594	-		GFF2616	0.13	+0.0
20,722	+		GFF2616	0.39	-0.2
20,729	+		GFF2616	0.41	-1.0
20,729	+		GFF2616	0.41	+0.9
20,730	-		GFF2616	0.41	-1.2
20,730	-		GFF2616	0.41	-0.5
20,731	+		GFF2616	0.41	-0.4
20,735	+		GFF2616	0.42	-0.5
20,943	+		GFF2616	0.85	-0.0
20,944	-		GFF2616	0.85	+0.3
21,006	-				+1.2
21,029	+				+0.2
21,030	-				-0.2
21,030	-				-0.9
21,030	-				-0.2
21,048	+		GFF2617	0.12	+0.4
21,048	+		GFF2617	0.12	+0.5
21,202	+				+0.1
21,202	+				-0.3
21,202	+				-0.5
21,202	+				+0.6
21,202	+				+0.1
21,202	+				+0.3
21,202	+				+0.0
21,202	+				-0.9
21,202	+				+0.4
21,203	-				+0.0
21,203	-				+0.4
21,204	+				-0.5
21,204	+				+0.6
21,204	+				+0.8
21,204	+				+1.1
21,205	-				-0.1
21,205	-				-0.1
21,205	-				+0.1
21,205	-				-1.0
21,205	-				-0.9
21,210	+				-0.3
21,210	+				+0.5
21,210	+				-1.6
21,210	+				+1.1
21,211	-				-0.5
21,211	-				-1.1
21,262	+				+1.2
21,262	+				-0.2
21,262	+				-1.4
21,262	+				-0.8
21,262	+				+0.6
21,262	+				+0.1
21,263	-				-0.3
21,263	-				+0.2
21,263	-				-1.7
21,275	+				+1.3
21,275	+				+0.8
21,275	+				-0.0
21,275	+				+0.3
21,275	+				-1.5
21,276	-				+1.9
21,276	-				+0.3
21,276	-				-0.8
21,276	-				+0.9
21,276	-				+1.0
21,276	-				-1.0
21,276	-				-0.0
21,276	-				-0.2
21,276	-				-0.5
21,276	-				-1.8
21,276	-				+0.3
21,277	+				+0.2
21,278	-				-0.5
21,340	+				-0.6
21,405	+				+0.3
21,405	+				+0.4
21,406	-				-0.2
21,406	-				-0.5
21,426	+				+0.2
21,426	+				-1.0
21,427	-				+1.5
21,461	-				+0.7
21,498	+				+0.6
21,498	+				+0.5
21,498	+				+0.1
21,499	-				+0.4
21,499	-				-2.0
21,499	-				-0.3
21,499	-				+0.7
21,499	-				-0.7
21,501	+				-0.3
21,502	-				-0.8
21,502	-				-0.6
21,502	-				+0.4
21,507	+				+0.6
21,516	+				+0.0
21,517	-				-0.0
21,517	-				+0.8
21,517	-				-1.0
21,517	-				-0.6
21,561	+				-0.8
21,561	+				-0.5
21,606	+				-0.1
21,606	+				+0.2
21,606	+				-0.6
21,606	+				-0.1
21,607	-				-0.1
21,607	-				-1.1
21,607	-				+0.7
21,607	-				+1.9
21,607	-				-0.3
21,607	-				-1.8
21,661	+				+0.7
21,662	-				-0.5
21,662	-				-0.6
21,671	-				+0.2
21,763	+		GFF2618	0.26	-1.3
21,786	+		GFF2618	0.32	+0.5
21,787	-		GFF2618	0.33	-0.5
21,787	-		GFF2618	0.33	-0.9
21,879	+		GFF2618	0.56	-0.7
21,917	+		GFF2618	0.66	+0.4
21,948	-		GFF2618	0.74	+0.2
22,066	+				-1.4
22,068	+				-1.2
22,069	-				+0.2
22,069	-				-0.2
22,070	+				-0.7
22,070	+				-0.4
22,070	+				-0.6
22,070	+				+0.1
22,070	+				+2.3
22,070	+				-0.2
22,070	+				+0.0
22,071	-				+0.2
22,071	-				+0.6
22,071	-				-0.7
22,071	-				-0.8
22,071	-				-0.0
22,111	+				+1.4
22,111	+				-1.6
22,111	+				+0.0
22,111	+				+0.6
22,111	+				-0.2
22,111	+				-0.1
22,111	+				-0.4
22,111	+				-0.4
22,112	-				+1.5
22,112	-				+0.0
22,112	-				-1.3
22,153	+				-0.5
22,153	+				-0.7
22,153	+				+0.7
22,153	+				-0.2
22,154	-				-0.2
22,154	-				+0.3
22,154	-				-0.6
22,154	-				+0.2