Strain Fitness in Variovorax sp. SCN45 around GFF2605

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
9,116	+		GFF2603	0.78	-0.4
9,117	-		GFF2603	0.78	-0.2
9,348	+				-1.0
9,349	-				-0.3
9,349	-				-2.5
9,760	+		GFF2604	0.60	-0.6
9,760	+		GFF2604	0.60	+2.3
10,006	+				-0.4
10,006	+				-0.5
10,007	-				-1.4
10,007	-				+1.1
10,007	-				-0.1
10,007	-				-0.9
10,007	-				+0.4
10,024	+				+1.1
10,024	+				-0.6
10,025	-				-1.3
10,025	-				+1.0
10,025	-				-0.4
10,180	+		GFF2605	0.10	+0.8
10,265	-		GFF2605	0.16	-0.4
10,405	+		GFF2605	0.26	+0.9
10,406	-		GFF2605	0.26	+0.3
10,417	+		GFF2605	0.27	-1.2
10,417	+		GFF2605	0.27	+0.5
10,417	+		GFF2605	0.27	+0.5
10,418	-		GFF2605	0.27	-1.5
10,448	-		GFF2605	0.29	+0.7
10,661	+		GFF2605	0.44	-1.9
10,661	+		GFF2605	0.44	+0.5
10,661	+		GFF2605	0.44	-0.3
10,856	-		GFF2605	0.58	-0.9
11,164	+		GFF2605	0.80	+0.0
11,164	+		GFF2605	0.80	+1.3
11,165	-		GFF2605	0.80	-0.1
11,689	+		GFF2606	0.22	+0.3
11,689	+		GFF2606	0.22	+0.9
11,689	+		GFF2606	0.22	-0.2
11,690	-		GFF2606	0.22	+1.7
11,690	-		GFF2606	0.22	+0.1
12,268	+		GFF2606	0.79	+0.7
12,268	+		GFF2606	0.79	+0.5
12,269	-		GFF2606	0.79	+1.0
12,269	-		GFF2606	0.79	-0.6
12,346	+		GFF2606	0.86	+0.0
12,346	+		GFF2606	0.86	-0.1
12,346	+		GFF2606	0.86	-0.5
12,376	+		GFF2606	0.89	-0.5
12,376	+		GFF2606	0.89	-1.5
12,377	-		GFF2606	0.89	+1.5
12,377	-		GFF2606	0.89	+0.8
12,412	+				-0.5
12,412	+				-0.7
12,412	+				-1.2
12,413	-				+0.3