Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2578 and GFF2579 are separated by 19 nucleotides GFF2579 and GFF2580 are separated by 69 nucleotides GFF2580 and GFF2581 are separated by 21 nucleotides GFF2581 and GFF2582 are separated by 78 nucleotides
GFF2578 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 634,690 to 635,532
GFF2578
GFF2579 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 635,552 to 636,445
GFF2579
GFF2580 - L-aspartate oxidase (EC 1.4.3.16), at 636,515 to 638,101
GFF2580
GFF2581 - Segregation and condensation protein A, at 638,123 to 638,959
GFF2581
GFF2582 - Uncharacterized DUF3460-containg protein Bmul_0854, at 639,038 to 639,244
GFF2582
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.528 kb on + strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.529 kb on - strand at 635.554 kb on - strand at 635.554 kb on - strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.607 kb on + strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.608 kb on - strand at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.918 kb on + strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 635.919 kb on - strand, within GFF2579 at 636.084 kb on + strand, within GFF2579 at 636.084 kb on + strand, within GFF2579 at 636.085 kb on - strand, within GFF2579 at 636.165 kb on + strand, within GFF2579 at 636.165 kb on + strand, within GFF2579 at 636.165 kb on + strand, within GFF2579 at 636.166 kb on - strand, within GFF2579 at 636.291 kb on + strand, within GFF2579 at 636.291 kb on + strand, within GFF2579 at 636.292 kb on - strand, within GFF2579 at 636.292 kb on - strand, within GFF2579 at 636.292 kb on - strand, within GFF2579 at 636.399 kb on + strand at 636.696 kb on + strand, within GFF2580 at 636.696 kb on + strand, within GFF2580 at 636.696 kb on + strand, within GFF2580 at 636.697 kb on - strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.780 kb on + strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 636.781 kb on - strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.011 kb on + strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.012 kb on - strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.068 kb on + strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.069 kb on - strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.194 kb on + strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.195 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.378 kb on - strand, within GFF2580 at 637.485 kb on + strand, within GFF2580 at 637.485 kb on + strand, within GFF2580 at 637.485 kb on + strand, within GFF2580 at 637.485 kb on + strand, within GFF2580 at 637.485 kb on + strand, within GFF2580 at 637.486 kb on - strand, within GFF2580 at 637.486 kb on - strand, within GFF2580 at 637.486 kb on - strand, within GFF2580 at 637.486 kb on - strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.491 kb on + strand, within GFF2580 at 637.492 kb on - strand, within GFF2580 at 637.492 kb on - strand, within GFF2580 at 637.492 kb on - strand, within GFF2580 at 637.492 kb on - strand, within GFF2580 at 637.492 kb on - strand, within GFF2580 at 637.575 kb on + strand, within GFF2580 at 637.575 kb on + strand, within GFF2580 at 637.576 kb on - strand, within GFF2580 at 637.576 kb on - strand, within GFF2580 at 637.576 kb on - strand, within GFF2580 at 638.137 kb on - strand at 638.137 kb on - strand at 638.982 kb on + strand at 639.040 kb on - strand at 639.040 kb on - strand at 639.040 kb on - strand at 639.040 kb on - strand at 639.040 kb on - strand at 639.058 kb on - strand at 639.058 kb on - strand at 639.063 kb on + strand, within GFF2582 at 639.063 kb on + strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.064 kb on - strand, within GFF2582 at 639.093 kb on + strand, within GFF2582 at 639.093 kb on + strand, within GFF2582 at 639.094 kb on - strand, within GFF2582 at 639.094 kb on - strand, within GFF2582 at 639.094 kb on - strand, within GFF2582
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 635,528 + +0.2 635,528 + +0.3 635,528 + +0.3 635,528 + -1.7 635,528 + -0.6 635,528 + -0.5 635,528 + -0.4 635,528 + -1.6 635,528 + -0.6 635,528 + -0.8 635,529 - -0.6 635,529 - -0.7 635,529 - +0.7 635,529 - +1.8 635,529 - -0.8 635,529 - +0.1 635,529 - -2.0 635,529 - -0.3 635,554 - +1.6 635,554 - +1.7 635,607 + -0.6 635,607 + -3.2 635,607 + -0.7 635,607 + -0.8 635,607 + -0.8 635,607 + -0.2 635,607 + -2.7 635,607 + +0.1 635,607 + -0.4 635,607 + +0.7 635,607 + +0.3 635,607 + -0.9 635,608 - +0.6 635,608 - +0.9 635,608 - -0.0 635,608 - -1.3 635,608 - +0.8 635,608 - -1.3 635,608 - +0.4 635,608 - +1.0 635,608 - +0.3 635,918 + GFF2579 0.41 -0.0 635,918 + GFF2579 0.41 +1.8 635,918 + GFF2579 0.41 +0.0 635,918 + GFF2579 0.41 +0.8 635,918 + GFF2579 0.41 +0.1 635,918 + GFF2579 0.41 -0.5 635,918 + GFF2579 0.41 -1.7 635,918 + GFF2579 0.41 +0.8 635,918 + GFF2579 0.41 -0.1 635,919 - GFF2579 0.41 -0.3 635,919 - GFF2579 0.41 +0.2 635,919 - GFF2579 0.41 +0.1 635,919 - GFF2579 0.41 -0.3 635,919 - GFF2579 0.41 -0.6 635,919 - GFF2579 0.41 +0.1 635,919 - GFF2579 0.41 +1.3 635,919 - GFF2579 0.41 -0.4 635,919 - GFF2579 0.41 +0.3 635,919 - GFF2579 0.41 -0.1 635,919 - GFF2579 0.41 +0.1 635,919 - GFF2579 0.41 -0.2 635,919 - GFF2579 0.41 -1.1 636,084 + GFF2579 0.60 -1.6 636,084 + GFF2579 0.60 -1.7 636,085 - GFF2579 0.60 -0.4 636,165 + GFF2579 0.69 +0.1 636,165 + GFF2579 0.69 +0.3 636,165 + GFF2579 0.69 -1.7 636,166 - GFF2579 0.69 -1.0 636,291 + GFF2579 0.83 +0.5 636,291 + GFF2579 0.83 -0.6 636,292 - GFF2579 0.83 -0.5 636,292 - GFF2579 0.83 -2.2 636,292 - GFF2579 0.83 +0.2 636,399 + -0.7 636,696 + GFF2580 0.11 -0.7 636,696 + GFF2580 0.11 -1.1 636,696 + GFF2580 0.11 -0.5 636,697 - GFF2580 0.11 -0.5 636,780 + GFF2580 0.17 -1.5 636,780 + GFF2580 0.17 -0.5 636,780 + GFF2580 0.17 -0.5 636,780 + GFF2580 0.17 -1.2 636,780 + GFF2580 0.17 +0.2 636,780 + GFF2580 0.17 +0.3 636,780 + GFF2580 0.17 -0.2 636,780 + GFF2580 0.17 +0.7 636,780 + GFF2580 0.17 -0.9 636,780 + GFF2580 0.17 +0.8 636,780 + GFF2580 0.17 -1.1 636,780 + GFF2580 0.17 +0.2 636,780 + GFF2580 0.17 -1.0 636,780 + GFF2580 0.17 -0.4 636,781 - GFF2580 0.17 -0.3 636,781 - GFF2580 0.17 -0.7 636,781 - GFF2580 0.17 -0.6 636,781 - GFF2580 0.17 +0.4 636,781 - GFF2580 0.17 +0.1 636,781 - GFF2580 0.17 -1.1 636,781 - GFF2580 0.17 -0.1 636,781 - GFF2580 0.17 -0.9 636,781 - GFF2580 0.17 -0.5 636,781 - GFF2580 0.17 -0.2 636,781 - GFF2580 0.17 -0.8 636,781 - GFF2580 0.17 -0.8 637,011 + GFF2580 0.31 -1.3 637,011 + GFF2580 0.31 -0.4 637,011 + GFF2580 0.31 +0.3 637,011 + GFF2580 0.31 -0.1 637,012 - GFF2580 0.31 -0.8 637,012 - GFF2580 0.31 -0.5 637,012 - GFF2580 0.31 -0.9 637,012 - GFF2580 0.31 +0.3 637,012 - GFF2580 0.31 +0.1 637,012 - GFF2580 0.31 -0.2 637,068 + GFF2580 0.35 -0.2 637,068 + GFF2580 0.35 -0.6 637,068 + GFF2580 0.35 -1.7 637,068 + GFF2580 0.35 -0.2 637,068 + GFF2580 0.35 +1.4 637,068 + GFF2580 0.35 -0.4 637,068 + GFF2580 0.35 +0.6 637,068 + GFF2580 0.35 -0.4 637,068 + GFF2580 0.35 -0.4 637,069 - GFF2580 0.35 +0.4 637,069 - GFF2580 0.35 -1.9 637,069 - GFF2580 0.35 +1.0 637,069 - GFF2580 0.35 -0.9 637,069 - GFF2580 0.35 +0.6 637,069 - GFF2580 0.35 +0.3 637,069 - GFF2580 0.35 -1.5 637,069 - GFF2580 0.35 -0.0 637,069 - GFF2580 0.35 -1.1 637,069 - GFF2580 0.35 -1.5 637,069 - GFF2580 0.35 -0.5 637,194 + GFF2580 0.43 -0.4 637,194 + GFF2580 0.43 -1.2 637,194 + GFF2580 0.43 -2.3 637,194 + GFF2580 0.43 -0.7 637,194 + GFF2580 0.43 -0.2 637,194 + GFF2580 0.43 -0.7 637,194 + GFF2580 0.43 -0.3 637,194 + GFF2580 0.43 +1.1 637,195 - GFF2580 0.43 +0.0 637,195 - GFF2580 0.43 -1.0 637,195 - GFF2580 0.43 -2.0 637,195 - GFF2580 0.43 -0.7 637,195 - GFF2580 0.43 -1.9 637,378 - GFF2580 0.54 -1.8 637,378 - GFF2580 0.54 -1.9 637,378 - GFF2580 0.54 -0.2 637,378 - GFF2580 0.54 -0.3 637,378 - GFF2580 0.54 +0.5 637,485 + GFF2580 0.61 -1.4 637,485 + GFF2580 0.61 -1.3 637,485 + GFF2580 0.61 -1.6 637,485 + GFF2580 0.61 -0.0 637,485 + GFF2580 0.61 -1.3 637,486 - GFF2580 0.61 -1.2 637,486 - GFF2580 0.61 -1.3 637,486 - GFF2580 0.61 -0.4 637,486 - GFF2580 0.61 -1.5 637,491 + GFF2580 0.61 +0.1 637,491 + GFF2580 0.61 -0.2 637,491 + GFF2580 0.61 +0.0 637,491 + GFF2580 0.61 -4.1 637,491 + GFF2580 0.61 -1.7 637,491 + GFF2580 0.61 -0.6 637,491 + GFF2580 0.61 -0.2 637,492 - GFF2580 0.62 -1.4 637,492 - GFF2580 0.62 -2.2 637,492 - GFF2580 0.62 +0.8 637,492 - GFF2580 0.62 -1.7 637,492 - GFF2580 0.62 -1.0 637,575 + GFF2580 0.67 +0.3 637,575 + GFF2580 0.67 -0.6 637,576 - GFF2580 0.67 +0.3 637,576 - GFF2580 0.67 -0.6 637,576 - GFF2580 0.67 +0.1 638,137 - +0.6 638,137 - -1.8 638,982 + +0.3 639,040 - -0.3 639,040 - -0.4 639,040 - +0.0 639,040 - +0.4 639,040 - +0.0 639,058 - -0.2 639,058 - -2.6 639,063 + GFF2582 0.12 -2.0 639,063 + GFF2582 0.12 -0.2 639,064 - GFF2582 0.13 +0.7 639,064 - GFF2582 0.13 -0.2 639,064 - GFF2582 0.13 -0.1 639,064 - GFF2582 0.13 -0.2 639,064 - GFF2582 0.13 +0.0 639,064 - GFF2582 0.13 +0.6 639,064 - GFF2582 0.13 -0.2 639,064 - GFF2582 0.13 -0.9 639,093 + GFF2582 0.27 +0.1 639,093 + GFF2582 0.27 +1.3 639,094 - GFF2582 0.27 -0.4 639,094 - GFF2582 0.27 +2.4 639,094 - GFF2582 0.27 +0.5
Or see this region's nucleotide sequence