Strain Fitness in Variovorax sp. SCN45 around GFF2576

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2575 and GFF2576 are separated by 117 nucleotidesGFF2576 and GFF2577 are separated by 40 nucleotidesGFF2577 and GFF2578 overlap by 4 nucleotides GFF2575 - Quinolinate synthetase (EC 2.5.1.72), at 632,398 to 633,534 GFF2575 GFF2576 - 6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50), at 633,652 to 634,014 GFF2576 GFF2577 - 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3), at 634,055 to 634,693 GFF2577 GFF2578 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 634,690 to 635,532 GFF2578 Position (kb) 633 634 635Strain fitness (log2 ratio) -3 -2 -1 0 1at 632.869 kb on + strand, within GFF2575at 632.869 kb on + strand, within GFF2575at 632.869 kb on + strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 632.870 kb on - strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.004 kb on + strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.005 kb on - strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.267 kb on + strand, within GFF2575at 633.268 kb on - strand, within GFF2575at 633.268 kb on - strand, within GFF2575at 633.303 kb on + strand, within GFF2575at 633.304 kb on - strand, within GFF2575at 633.304 kb on - strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.357 kb on + strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.358 kb on - strand, within GFF2575at 633.653 kb on + strandat 633.653 kb on + strandat 633.654 kb on - strandat 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.914 kb on + strand, within GFF2576at 633.915 kb on - strand, within GFF2576at 633.915 kb on - strand, within GFF2576at 633.915 kb on - strand, within GFF2576at 633.915 kb on - strand, within GFF2576at 633.915 kb on - strand, within GFF2576at 633.930 kb on + strand, within GFF2576at 633.930 kb on + strand, within GFF2576at 633.931 kb on - strand, within GFF2576at 634.665 kb on + strandat 634.665 kb on + strandat 634.665 kb on + strandat 634.665 kb on + strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.666 kb on - strandat 634.686 kb on + strandat 634.686 kb on + strandat 634.686 kb on + strandat 634.686 kb on + strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.687 kb on - strandat 634.823 kb on + strand, within GFF2578at 634.823 kb on + strand, within GFF2578at 634.823 kb on + strand, within GFF2578at 634.823 kb on + strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.824 kb on - strand, within GFF2578at 634.873 kb on + strand, within GFF2578at 634.874 kb on - strand, within GFF2578at 634.874 kb on - strand, within GFF2578at 634.874 kb on - strand, within GFF2578at 634.973 kb on + strand, within GFF2578at 634.974 kb on - strand, within GFF2578

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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632,869 + GFF2575 0.41 +0.4
632,869 + GFF2575 0.41 -1.4
632,869 + GFF2575 0.41 -0.6
632,870 - GFF2575 0.42 -2.9
632,870 - GFF2575 0.42 -3.0
632,870 - GFF2575 0.42 -1.8
632,870 - GFF2575 0.42 -1.3
633,004 + GFF2575 0.53 -2.0
633,004 + GFF2575 0.53 -1.4
633,004 + GFF2575 0.53 -2.5
633,004 + GFF2575 0.53 -0.7
633,004 + GFF2575 0.53 -1.1
633,004 + GFF2575 0.53 -1.1
633,004 + GFF2575 0.53 -1.0
633,005 - GFF2575 0.53 -1.3
633,005 - GFF2575 0.53 -0.9
633,005 - GFF2575 0.53 -1.3
633,005 - GFF2575 0.53 -2.2
633,005 - GFF2575 0.53 -0.9
633,005 - GFF2575 0.53 -0.5
633,005 - GFF2575 0.53 -2.0
633,005 - GFF2575 0.53 -0.7
633,005 - GFF2575 0.53 -2.6
633,005 - GFF2575 0.53 -0.0
633,005 - GFF2575 0.53 -0.5
633,005 - GFF2575 0.53 +1.1
633,005 - GFF2575 0.53 -1.1
633,005 - GFF2575 0.53 -1.3
633,267 + GFF2575 0.76 -1.7
633,267 + GFF2575 0.76 -2.5
633,267 + GFF2575 0.76 +0.1
633,267 + GFF2575 0.76 -1.2
633,268 - GFF2575 0.77 -1.0
633,268 - GFF2575 0.77 -0.7
633,303 + GFF2575 0.80 -1.8
633,304 - GFF2575 0.80 -0.7
633,304 - GFF2575 0.80 -2.6
633,357 + GFF2575 0.84 +0.3
633,357 + GFF2575 0.84 -2.0
633,357 + GFF2575 0.84 -1.5
633,357 + GFF2575 0.84 -0.3
633,357 + GFF2575 0.84 -1.0
633,357 + GFF2575 0.84 -1.6
633,357 + GFF2575 0.84 -1.2
633,358 - GFF2575 0.84 -0.1
633,358 - GFF2575 0.84 -1.3
633,358 - GFF2575 0.84 -2.8
633,358 - GFF2575 0.84 -1.4
633,358 - GFF2575 0.84 -1.7
633,358 - GFF2575 0.84 -0.3
633,358 - GFF2575 0.84 -0.7
633,358 - GFF2575 0.84 +0.3
633,358 - GFF2575 0.84 -1.3
633,653 + -0.5
633,653 + -0.6
633,654 - -0.3
633,914 + GFF2576 0.72 +0.1
633,914 + GFF2576 0.72 +0.3
633,914 + GFF2576 0.72 +0.7
633,914 + GFF2576 0.72 +0.7
633,914 + GFF2576 0.72 +0.9
633,914 + GFF2576 0.72 +0.8
633,914 + GFF2576 0.72 +0.6
633,914 + GFF2576 0.72 -0.2
633,914 + GFF2576 0.72 -0.2
633,915 - GFF2576 0.72 +1.6
633,915 - GFF2576 0.72 +0.3
633,915 - GFF2576 0.72 -1.7
633,915 - GFF2576 0.72 +0.3
633,915 - GFF2576 0.72 +0.4
633,930 + GFF2576 0.77 -0.5
633,930 + GFF2576 0.77 +0.2
633,931 - GFF2576 0.77 +0.7
634,665 + +1.6
634,665 + +0.7
634,665 + +0.3
634,665 + +0.3
634,666 - -1.9
634,666 - -1.2
634,666 - -0.2
634,666 - -0.7
634,666 - -0.4
634,666 - +0.7
634,666 - -1.1
634,666 - +0.8
634,666 - -0.7
634,666 - -1.3
634,686 + +0.5
634,686 + +0.2
634,686 + +0.4
634,686 + -0.1
634,687 - -0.7
634,687 - +1.3
634,687 - +0.2
634,687 - +0.5
634,687 - +0.4
634,687 - -0.0
634,687 - -0.3
634,687 - -0.5
634,687 - +0.6
634,823 + GFF2578 0.16 -0.8
634,823 + GFF2578 0.16 +0.2
634,823 + GFF2578 0.16 -1.7
634,823 + GFF2578 0.16 +0.7
634,824 - GFF2578 0.16 +0.4
634,824 - GFF2578 0.16 -0.4
634,824 - GFF2578 0.16 -2.2
634,824 - GFF2578 0.16 -0.3
634,824 - GFF2578 0.16 +0.3
634,824 - GFF2578 0.16 -1.2
634,873 + GFF2578 0.22 -1.4
634,874 - GFF2578 0.22 +0.7
634,874 - GFF2578 0.22 +0.7
634,874 - GFF2578 0.22 -0.6
634,973 + GFF2578 0.34 +0.0
634,974 - GFF2578 0.34 -0.3

Or see this region's nucleotide sequence