Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2525 and GFF2526 are separated by 112 nucleotides GFF2526 and GFF2527 are separated by 7 nucleotides GFF2527 and GFF2528 overlap by 1 nucleotides
GFF2525 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 585,597 to 586,868
GFF2525
GFF2526 - no description, at 586,981 to 587,259
GFF2526
GFF2527 - GCN5-related N-acetyltransferase, at 587,267 to 587,794
GFF2527
GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588
GFF2528
Position (kb) 586
587
588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.878 kb on + strand at 586.879 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 587.068 kb on + strand, within GFF2526 at 587.068 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.313 kb on + strand at 587.313 kb on + strand at 587.313 kb on + strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.521 kb on - strand, within GFF2527 at 587.521 kb on - strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.706 kb on + strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.945 kb on + strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 587.946 kb on - strand, within GFF2528
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 586,878 + -1.4 586,879 - -0.0 586,880 + -0.3 586,881 - -0.4 586,881 - -0.5 586,881 - +0.4 586,881 - -0.1 586,928 + -1.0 586,928 + -0.9 586,928 + -0.2 586,928 + +0.4 586,929 - +0.3 586,929 - +1.4 586,929 - +0.5 586,929 - -0.2 586,929 - -0.1 586,929 - +0.3 586,939 + -0.6 586,939 + -0.4 586,939 + -0.3 586,939 + -1.1 586,939 + +0.3 586,940 - -0.2 586,940 - -0.0 586,940 - -0.1 586,940 - -1.4 586,940 - -0.7 586,940 - +1.0 586,940 - -0.4 586,940 - -0.2 586,940 - +0.5 586,940 - +0.4 586,940 - -0.7 586,940 - -1.2 587,068 + GFF2526 0.31 +0.6 587,068 + GFF2526 0.31 -0.3 587,194 + GFF2526 0.76 -0.2 587,194 + GFF2526 0.76 -0.5 587,194 + GFF2526 0.76 +2.1 587,194 + GFF2526 0.76 -0.3 587,194 + GFF2526 0.76 -0.5 587,195 - GFF2526 0.77 -0.4 587,195 - GFF2526 0.77 +0.8 587,195 - GFF2526 0.77 +0.5 587,195 - GFF2526 0.77 +0.4 587,195 - GFF2526 0.77 +0.8 587,295 + +0.7 587,295 + -0.7 587,295 + +0.4 587,295 + +0.3 587,295 + -1.2 587,295 + +0.0 587,295 + +0.4 587,295 + -0.5 587,295 + -0.1 587,295 + +0.3 587,295 + +0.1 587,295 + -0.3 587,295 + -0.9 587,295 + -0.3 587,296 - -1.4 587,296 - +0.4 587,296 - -1.9 587,296 - +0.0 587,296 - -0.1 587,296 - +0.6 587,296 - -0.2 587,296 - +0.5 587,296 - -0.6 587,296 - +0.2 587,296 - -0.8 587,313 + +0.6 587,313 + +0.1 587,313 + -2.7 587,314 - +0.2 587,314 - +0.1 587,314 - +0.5 587,314 - -1.3 587,314 - -0.4 587,364 + GFF2527 0.18 -1.1 587,364 + GFF2527 0.18 +0.3 587,364 + GFF2527 0.18 -0.3 587,364 + GFF2527 0.18 -0.1 587,364 + GFF2527 0.18 -0.8 587,365 - GFF2527 0.19 +0.7 587,365 - GFF2527 0.19 +0.3 587,365 - GFF2527 0.19 -0.2 587,365 - GFF2527 0.19 -0.7 587,365 - GFF2527 0.19 -1.0 587,520 + GFF2527 0.48 +1.0 587,520 + GFF2527 0.48 -0.8 587,520 + GFF2527 0.48 -0.3 587,520 + GFF2527 0.48 +0.0 587,520 + GFF2527 0.48 -1.7 587,521 - GFF2527 0.48 -0.4 587,521 - GFF2527 0.48 -0.1 587,604 + GFF2527 0.64 +1.0 587,604 + GFF2527 0.64 -2.2 587,604 + GFF2527 0.64 -0.6 587,604 + GFF2527 0.64 -0.3 587,604 + GFF2527 0.64 -0.5 587,604 + GFF2527 0.64 -0.0 587,604 + GFF2527 0.64 +0.3 587,605 - GFF2527 0.64 +0.1 587,605 - GFF2527 0.64 -0.9 587,605 - GFF2527 0.64 +0.5 587,706 + GFF2527 0.83 +0.6 587,707 - GFF2527 0.83 +0.0 587,707 - GFF2527 0.83 -1.7 587,945 + GFF2528 0.19 +0.3 587,946 - GFF2528 0.19 -0.3 587,946 - GFF2528 0.19 -0.0
Or see this region's nucleotide sequence