Strain Fitness in Variovorax sp. SCN45 around GFF2476

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
534,887	-		GFF2475	0.80	+0.1
535,210	+				+1.5
535,210	+				+0.1
535,210	+				+0.0
535,210	+				-0.0
535,374	-		GFF2476	0.17	-0.6
535,374	-		GFF2476	0.17	+0.3
535,374	-		GFF2476	0.17	-1.3
535,374	-		GFF2476	0.17	-0.7
535,409	+		GFF2476	0.25	-1.9
535,410	-		GFF2476	0.25	+0.0
535,622	+		GFF2476	0.68	-0.1
535,623	-		GFF2476	0.68	-0.6
535,712	+		GFF2476	0.87	-0.4
535,712	+		GFF2476	0.87	-0.7
535,713	-		GFF2476	0.87	+0.3
535,764	+				-2.0
535,826	+				-0.2
535,827	-				+0.5
536,106	+		GFF2477	0.19	-0.5
536,235	-		GFF2477	0.28	+1.8
536,235	-		GFF2477	0.28	+0.3
536,652	+		GFF2477	0.55	+0.5
536,652	+		GFF2477	0.55	-0.5
536,652	+		GFF2477	0.55	+0.1
536,653	-		GFF2477	0.55	-0.3