Strain Fitness in Variovorax sp. SCN45 around GFF2287

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2286 and GFF2287 overlap by 4 nucleotidesGFF2287 and GFF2288 overlap by 4 nucleotides GFF2286 - BUG/TctC family periplasmic protein, at 341,399 to 342,394 GFF2286 GFF2287 - ortholog of Bordetella pertussis (BX470248) BP3300, at 342,391 to 343,353 GFF2287 GFF2288 - Glutathione-regulated potassium-efflux system protein KefC, at 343,350 to 345,206 GFF2288 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 341.567 kb on + strand, within GFF2286at 341.567 kb on + strand, within GFF2286at 341.567 kb on + strand, within GFF2286at 341.567 kb on + strand, within GFF2286at 341.568 kb on - strand, within GFF2286at 341.678 kb on + strand, within GFF2286at 341.679 kb on - strand, within GFF2286at 341.679 kb on - strand, within GFF2286at 341.744 kb on + strand, within GFF2286at 341.745 kb on - strand, within GFF2286at 341.882 kb on + strand, within GFF2286at 341.882 kb on + strand, within GFF2286at 341.883 kb on - strand, within GFF2286at 341.883 kb on - strand, within GFF2286at 341.883 kb on - strand, within GFF2286at 341.883 kb on - strand, within GFF2286at 342.469 kb on + strandat 342.469 kb on + strandat 342.469 kb on + strandat 342.470 kb on - strandat 342.470 kb on - strandat 342.470 kb on - strandat 342.470 kb on - strandat 342.470 kb on - strandat 342.496 kb on + strand, within GFF2287at 342.496 kb on + strand, within GFF2287at 342.496 kb on + strand, within GFF2287at 342.497 kb on - strand, within GFF2287at 342.661 kb on + strand, within GFF2287at 342.661 kb on + strand, within GFF2287at 342.661 kb on + strand, within GFF2287at 342.662 kb on - strand, within GFF2287at 342.662 kb on - strand, within GFF2287at 342.662 kb on - strand, within GFF2287at 342.662 kb on - strand, within GFF2287at 342.662 kb on - strand, within GFF2287at 342.662 kb on - strand, within GFF2287at 342.688 kb on + strand, within GFF2287at 342.688 kb on + strand, within GFF2287at 342.689 kb on - strand, within GFF2287at 342.814 kb on + strand, within GFF2287at 342.814 kb on + strand, within GFF2287at 342.815 kb on - strand, within GFF2287at 342.815 kb on - strand, within GFF2287at 342.815 kb on - strand, within GFF2287at 342.815 kb on - strand, within GFF2287at 342.815 kb on - strand, within GFF2287at 342.815 kb on - strand, within GFF2287at 342.866 kb on - strand, within GFF2287at 342.866 kb on - strand, within GFF2287at 342.866 kb on - strand, within GFF2287at 342.866 kb on - strand, within GFF2287at 342.971 kb on - strand, within GFF2287at 343.333 kb on + strandat 343.333 kb on + strandat 343.334 kb on - strandat 343.351 kb on + strandat 343.352 kb on - strandat 343.501 kb on + strandat 343.501 kb on + strandat 343.502 kb on - strandat 343.502 kb on - strandat 343.502 kb on - strandat 343.502 kb on - strandat 343.502 kb on - strandat 343.502 kb on - strandat 343.510 kb on + strandat 343.510 kb on + strandat 343.510 kb on + strandat 343.511 kb on - strandat 343.511 kb on - strandat 343.644 kb on + strand, within GFF2288at 343.645 kb on - strand, within GFF2288at 343.645 kb on - strand, within GFF2288at 343.645 kb on - strand, within GFF2288at 343.645 kb on - strand, within GFF2288at 343.847 kb on - strand, within GFF2288at 343.847 kb on - strand, within GFF2288at 344.038 kb on + strand, within GFF2288at 344.038 kb on + strand, within GFF2288at 344.039 kb on - strand, within GFF2288at 344.227 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.257 kb on + strand, within GFF2288at 344.258 kb on - strand, within GFF2288

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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341,567 + GFF2286 0.17 +0.6
341,567 + GFF2286 0.17 +0.6
341,567 + GFF2286 0.17 +0.5
341,567 + GFF2286 0.17 +0.3
341,568 - GFF2286 0.17 -0.2
341,678 + GFF2286 0.28 +0.1
341,679 - GFF2286 0.28 +0.2
341,679 - GFF2286 0.28 -0.5
341,744 + GFF2286 0.35 +0.9
341,745 - GFF2286 0.35 +0.2
341,882 + GFF2286 0.48 +0.0
341,882 + GFF2286 0.48 -0.9
341,883 - GFF2286 0.49 -0.3
341,883 - GFF2286 0.49 -0.7
341,883 - GFF2286 0.49 -0.4
341,883 - GFF2286 0.49 -0.1
342,469 + +0.1
342,469 + -0.0
342,469 + -0.7
342,470 - -1.0
342,470 - +0.3
342,470 - -0.4
342,470 - -2.7
342,470 - +0.6
342,496 + GFF2287 0.11 +0.3
342,496 + GFF2287 0.11 -2.4
342,496 + GFF2287 0.11 +0.9
342,497 - GFF2287 0.11 -0.4
342,661 + GFF2287 0.28 +0.1
342,661 + GFF2287 0.28 +0.4
342,661 + GFF2287 0.28 -0.4
342,662 - GFF2287 0.28 +1.3
342,662 - GFF2287 0.28 +0.7
342,662 - GFF2287 0.28 +0.3
342,662 - GFF2287 0.28 +1.4
342,662 - GFF2287 0.28 -0.5
342,662 - GFF2287 0.28 -0.6
342,688 + GFF2287 0.31 -0.8
342,688 + GFF2287 0.31 -0.5
342,689 - GFF2287 0.31 -0.6
342,814 + GFF2287 0.44 +0.1
342,814 + GFF2287 0.44 -0.2
342,815 - GFF2287 0.44 +0.4
342,815 - GFF2287 0.44 +0.3
342,815 - GFF2287 0.44 +0.8
342,815 - GFF2287 0.44 -0.1
342,815 - GFF2287 0.44 +0.9
342,815 - GFF2287 0.44 +1.1
342,866 - GFF2287 0.49 -0.3
342,866 - GFF2287 0.49 -1.4
342,866 - GFF2287 0.49 +2.1
342,866 - GFF2287 0.49 +0.1
342,971 - GFF2287 0.60 -0.4
343,333 + +0.9
343,333 + -2.3
343,334 - -0.5
343,351 + -0.3
343,352 - -0.5
343,501 + +1.2
343,501 + -0.0
343,502 - +0.8
343,502 - +1.1
343,502 - -0.5
343,502 - +0.2
343,502 - -0.1
343,502 - +0.0
343,510 + -0.7
343,510 + -0.5
343,510 + +0.5
343,511 - +0.4
343,511 - +0.5
343,644 + GFF2288 0.16 -0.4
343,645 - GFF2288 0.16 -0.7
343,645 - GFF2288 0.16 -0.4
343,645 - GFF2288 0.16 -0.3
343,645 - GFF2288 0.16 +1.1
343,847 - GFF2288 0.27 -0.1
343,847 - GFF2288 0.27 -0.8
344,038 + GFF2288 0.37 -0.6
344,038 + GFF2288 0.37 +0.4
344,039 - GFF2288 0.37 -0.2
344,227 + GFF2288 0.47 +0.3
344,257 + GFF2288 0.49 -0.1
344,257 + GFF2288 0.49 +0.8
344,257 + GFF2288 0.49 -0.1
344,257 + GFF2288 0.49 -1.3
344,257 + GFF2288 0.49 -0.6
344,257 + GFF2288 0.49 +0.0
344,257 + GFF2288 0.49 -0.3
344,258 - GFF2288 0.49 +0.2

Or see this region's nucleotide sequence