Strain Fitness in Variovorax sp. SCN45 around GFF2237

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
296,543	+		GFF2235	0.60	-0.6
296,772	+				-1.2
296,773	-				+0.5
296,773	-				-0.2
297,075	+		GFF2236	0.59	-0.2
297,210	+				-0.2
297,210	+				-1.1
297,295	-				-0.2
297,442	+		GFF2237	0.21	-0.1
297,442	+		GFF2237	0.21	-1.7
297,442	+		GFF2237	0.21	-0.2
297,443	-		GFF2237	0.22	-1.1
297,443	-		GFF2237	0.22	-0.2
297,620	-		GFF2237	0.52	-0.0
297,659	-		GFF2237	0.59	-0.8
297,863	-				-0.5
297,955	+				-1.1
297,956	-				-0.5
298,072	-		GFF2238	0.11	+0.2
298,204	-		GFF2238	0.40	+0.1
298,243	-		GFF2238	0.48	-0.6
298,243	-		GFF2238	0.48	-0.1
298,580	-				-0.1
298,580	-				-1.7
298,580	-				-0.6
298,633	+				+0.3
298,633	+				-2.4
298,634	-				-0.0
298,634	-				-0.3
298,679	-				-0.7
298,679	-				+1.0
298,679	-				-0.7
298,739	+				+0.0
298,739	+				+0.7
298,739	+				+1.3
298,739	+				-0.2