Strain Fitness in Variovorax sp. SCN45 around GFF2195

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2193 and GFF2194 are separated by 84 nucleotidesGFF2194 and GFF2195 are separated by 106 nucleotidesGFF2195 and GFF2196 are separated by 198 nucleotidesGFF2196 and GFF2197 are separated by 24 nucleotides GFF2193 - PE_PGRS, at 248,600 to 252,736 GFF2193 GFF2194 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 252,821 to 253,324 GFF2194 GFF2195 - FIG00732904: hypothetical protein, at 253,431 to 256,526 GFF2195 GFF2196 - no description, at 256,725 to 256,871 GFF2196 GFF2197 - Type I secretion system ATPase, LssB family LapB, at 256,896 to 258,713 GFF2197 Position (kb) 253 254 255 256 257Strain fitness (log2 ratio) -2 -1 0 1 2 3at 252.821 kb on - strandat 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.917 kb on + strand, within GFF2194at 252.917 kb on + strand, within GFF2194at 252.917 kb on + strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.920 kb on + strand, within GFF2194at 252.920 kb on + strand, within GFF2194at 252.920 kb on + strand, within GFF2194at 252.921 kb on - strand, within GFF2194at 253.013 kb on + strand, within GFF2194at 253.013 kb on + strand, within GFF2194at 253.013 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.148 kb on + strand, within GFF2194at 253.148 kb on + strand, within GFF2194at 253.286 kb on + strandat 253.287 kb on - strandat 253.317 kb on - strandat 253.740 kb on + strandat 253.740 kb on + strandat 253.740 kb on + strandat 253.741 kb on - strand, within GFF2195at 253.875 kb on + strand, within GFF2195at 253.875 kb on + strand, within GFF2195at 253.876 kb on - strand, within GFF2195at 253.876 kb on - strand, within GFF2195at 253.876 kb on - strand, within GFF2195at 253.935 kb on + strand, within GFF2195at 254.079 kb on + strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.118 kb on + strand, within GFF2195at 254.118 kb on + strand, within GFF2195at 254.119 kb on - strand, within GFF2195at 254.119 kb on - strand, within GFF2195at 254.157 kb on + strand, within GFF2195at 254.157 kb on + strand, within GFF2195at 254.157 kb on + strand, within GFF2195at 254.158 kb on - strand, within GFF2195at 254.188 kb on - strand, within GFF2195at 254.188 kb on - strand, within GFF2195at 254.287 kb on - strand, within GFF2195at 254.287 kb on - strand, within GFF2195at 254.385 kb on + strand, within GFF2195at 254.385 kb on + strand, within GFF2195at 254.385 kb on + strand, within GFF2195at 254.386 kb on - strand, within GFF2195at 254.386 kb on - strand, within GFF2195at 254.535 kb on + strand, within GFF2195at 254.535 kb on + strand, within GFF2195at 254.535 kb on + strand, within GFF2195at 254.535 kb on + strand, within GFF2195at 254.536 kb on - strand, within GFF2195at 254.536 kb on - strand, within GFF2195at 254.536 kb on - strand, within GFF2195at 254.536 kb on - strand, within GFF2195at 254.536 kb on - strand, within GFF2195at 254.538 kb on + strand, within GFF2195at 254.539 kb on - strand, within GFF2195at 254.539 kb on - strand, within GFF2195at 254.539 kb on - strand, within GFF2195at 254.574 kb on + strand, within GFF2195at 254.574 kb on + strand, within GFF2195at 254.718 kb on + strand, within GFF2195at 254.718 kb on + strand, within GFF2195at 254.719 kb on - strand, within GFF2195at 254.908 kb on - strand, within GFF2195at 254.920 kb on - strand, within GFF2195at 254.958 kb on + strand, within GFF2195at 254.959 kb on - strand, within GFF2195at 254.959 kb on - strand, within GFF2195at 255.042 kb on + strand, within GFF2195at 255.042 kb on + strand, within GFF2195at 255.042 kb on + strand, within GFF2195at 255.042 kb on + strand, within GFF2195at 255.042 kb on + strand, within GFF2195at 255.043 kb on - strand, within GFF2195at 255.043 kb on - strand, within GFF2195at 255.043 kb on - strand, within GFF2195at 255.043 kb on - strand, within GFF2195at 255.043 kb on - strand, within GFF2195at 255.043 kb on - strand, within GFF2195at 255.063 kb on + strand, within GFF2195at 255.064 kb on - strand, within GFF2195at 255.072 kb on + strand, within GFF2195at 255.882 kb on + strand, within GFF2195at 255.882 kb on + strand, within GFF2195at 255.882 kb on + strand, within GFF2195at 255.883 kb on - strand, within GFF2195at 256.159 kb on - strand, within GFF2195at 256.159 kb on - strand, within GFF2195at 256.160 kb on - strand, within GFF2195at 256.553 kb on + strandat 256.785 kb on + strand, within GFF2196at 256.785 kb on + strand, within GFF2196at 256.786 kb on - strand, within GFF2196at 256.786 kb on - strand, within GFF2196at 256.786 kb on - strand, within GFF2196at 256.786 kb on - strand, within GFF2196at 256.786 kb on - strand, within GFF2196at 256.833 kb on + strand, within GFF2196at 256.834 kb on - strand, within GFF2196at 256.855 kb on - strand, within GFF2196at 257.082 kb on + strand, within GFF2197at 257.083 kb on - strand, within GFF2197at 257.083 kb on - strand, within GFF2197at 257.307 kb on + strand, within GFF2197at 257.307 kb on + strand, within GFF2197at 257.307 kb on + strand, within GFF2197at 257.308 kb on - strand, within GFF2197at 257.308 kb on - strand, within GFF2197

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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252,821 - -0.3
252,914 + GFF2194 0.18 -0.6
252,914 + GFF2194 0.18 -0.8
252,914 + GFF2194 0.18 -1.3
252,914 + GFF2194 0.18 +1.5
252,914 + GFF2194 0.18 +0.2
252,914 + GFF2194 0.18 +0.0
252,914 + GFF2194 0.18 -0.2
252,915 - GFF2194 0.19 +0.6
252,915 - GFF2194 0.19 -0.3
252,915 - GFF2194 0.19 -0.6
252,915 - GFF2194 0.19 +1.0
252,915 - GFF2194 0.19 -0.0
252,915 - GFF2194 0.19 -1.8
252,915 - GFF2194 0.19 -1.0
252,917 + GFF2194 0.19 -0.1
252,917 + GFF2194 0.19 -0.2
252,917 + GFF2194 0.19 +0.6
252,918 - GFF2194 0.19 -1.1
252,918 - GFF2194 0.19 +0.1
252,918 - GFF2194 0.19 +0.7
252,918 - GFF2194 0.19 -0.0
252,918 - GFF2194 0.19 -0.5
252,918 - GFF2194 0.19 +0.7
252,920 + GFF2194 0.20 -1.1
252,920 + GFF2194 0.20 +0.4
252,920 + GFF2194 0.20 +0.3
252,921 - GFF2194 0.20 -1.1
253,013 + GFF2194 0.38 +0.0
253,013 + GFF2194 0.38 +0.2
253,013 + GFF2194 0.38 +0.5
253,031 + GFF2194 0.42 +1.1
253,031 + GFF2194 0.42 -0.6
253,031 + GFF2194 0.42 +0.7
253,031 + GFF2194 0.42 -0.3
253,031 + GFF2194 0.42 +0.3
253,032 - GFF2194 0.42 -0.7
253,032 - GFF2194 0.42 -1.3
253,032 - GFF2194 0.42 -0.5
253,032 - GFF2194 0.42 -0.6
253,032 - GFF2194 0.42 -1.9
253,079 + GFF2194 0.51 -1.0
253,079 + GFF2194 0.51 -0.8
253,079 + GFF2194 0.51 -0.6
253,079 + GFF2194 0.51 +1.1
253,079 + GFF2194 0.51 +0.2
253,080 - GFF2194 0.51 -0.1
253,080 - GFF2194 0.51 -0.1
253,080 - GFF2194 0.51 +0.6
253,080 - GFF2194 0.51 +1.4
253,080 - GFF2194 0.51 -0.2
253,080 - GFF2194 0.51 -0.1
253,080 - GFF2194 0.51 +0.9
253,148 + GFF2194 0.65 -1.2
253,148 + GFF2194 0.65 -1.3
253,286 + +1.9
253,287 - -0.7
253,317 - -1.8
253,740 + +0.5
253,740 + +0.4
253,740 + -0.6
253,741 - GFF2195 0.10 +0.4
253,875 + GFF2195 0.14 -0.0
253,875 + GFF2195 0.14 -0.7
253,876 - GFF2195 0.14 -0.2
253,876 - GFF2195 0.14 -0.7
253,876 - GFF2195 0.14 -0.5
253,935 + GFF2195 0.16 -1.1
254,079 + GFF2195 0.21 +0.3
254,080 - GFF2195 0.21 -0.8
254,080 - GFF2195 0.21 -1.1
254,080 - GFF2195 0.21 +0.4
254,080 - GFF2195 0.21 -0.6
254,118 + GFF2195 0.22 -0.1
254,118 + GFF2195 0.22 +0.1
254,119 - GFF2195 0.22 -1.6
254,119 - GFF2195 0.22 +0.2
254,157 + GFF2195 0.23 -0.1
254,157 + GFF2195 0.23 -0.6
254,157 + GFF2195 0.23 -0.0
254,158 - GFF2195 0.23 -0.2
254,188 - GFF2195 0.24 -0.4
254,188 - GFF2195 0.24 -0.1
254,287 - GFF2195 0.28 -1.2
254,287 - GFF2195 0.28 +2.9
254,385 + GFF2195 0.31 +0.3
254,385 + GFF2195 0.31 -0.0
254,385 + GFF2195 0.31 -0.7
254,386 - GFF2195 0.31 -0.5
254,386 - GFF2195 0.31 -0.5
254,535 + GFF2195 0.36 -1.3
254,535 + GFF2195 0.36 -0.1
254,535 + GFF2195 0.36 +0.3
254,535 + GFF2195 0.36 -0.3
254,536 - GFF2195 0.36 +0.0
254,536 - GFF2195 0.36 +0.4
254,536 - GFF2195 0.36 +0.3
254,536 - GFF2195 0.36 -0.7
254,536 - GFF2195 0.36 -0.2
254,538 + GFF2195 0.36 -0.6
254,539 - GFF2195 0.36 +0.2
254,539 - GFF2195 0.36 +1.1
254,539 - GFF2195 0.36 -0.8
254,574 + GFF2195 0.37 -0.6
254,574 + GFF2195 0.37 -0.4
254,718 + GFF2195 0.42 -0.8
254,718 + GFF2195 0.42 -0.1
254,719 - GFF2195 0.42 +0.2
254,908 - GFF2195 0.48 +0.5
254,920 - GFF2195 0.48 +0.3
254,958 + GFF2195 0.49 -0.7
254,959 - GFF2195 0.49 -2.5
254,959 - GFF2195 0.49 +1.0
255,042 + GFF2195 0.52 -1.7
255,042 + GFF2195 0.52 -0.0
255,042 + GFF2195 0.52 -1.1
255,042 + GFF2195 0.52 -0.2
255,042 + GFF2195 0.52 +0.4
255,043 - GFF2195 0.52 -0.3
255,043 - GFF2195 0.52 -0.5
255,043 - GFF2195 0.52 -0.3
255,043 - GFF2195 0.52 +0.3
255,043 - GFF2195 0.52 -0.9
255,043 - GFF2195 0.52 -0.3
255,063 + GFF2195 0.53 -0.2
255,064 - GFF2195 0.53 -0.4
255,072 + GFF2195 0.53 -0.6
255,882 + GFF2195 0.79 -1.4
255,882 + GFF2195 0.79 -1.5
255,882 + GFF2195 0.79 -1.5
255,883 - GFF2195 0.79 -1.2
256,159 - GFF2195 0.88 -0.7
256,159 - GFF2195 0.88 -1.8
256,160 - GFF2195 0.88 -1.1
256,553 + -0.4
256,785 + GFF2196 0.41 -1.1
256,785 + GFF2196 0.41 +0.4
256,786 - GFF2196 0.41 +0.4
256,786 - GFF2196 0.41 +0.5
256,786 - GFF2196 0.41 -0.8
256,786 - GFF2196 0.41 -1.1
256,786 - GFF2196 0.41 -0.7
256,833 + GFF2196 0.73 -0.3
256,834 - GFF2196 0.74 -0.2
256,855 - GFF2196 0.88 +1.0
257,082 + GFF2197 0.10 -0.6
257,083 - GFF2197 0.10 +0.3
257,083 - GFF2197 0.10 -0.8
257,307 + GFF2197 0.23 +1.9
257,307 + GFF2197 0.23 -0.5
257,307 + GFF2197 0.23 -0.5
257,308 - GFF2197 0.23 +2.2
257,308 - GFF2197 0.23 -0.3

Or see this region's nucleotide sequence