Strain Fitness in Variovorax sp. SCN45 around GFF2184

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2183 and GFF2184 are separated by 67 nucleotidesGFF2184 and GFF2185 are separated by 25 nucleotidesGFF2185 and GFF2186 are separated by 34 nucleotidesGFF2186 and GFF2187 are separated by 4 nucleotides GFF2183 - Outer membrane component of TAM transport system, at 239,541 to 241,478 GFF2183 GFF2184 - VWA containing CoxE family protein, at 241,546 to 242,733 GFF2184 GFF2185 - Acetyltransferase, GNAT family, at 242,759 to 243,346 GFF2185 GFF2186 - no description, at 243,381 to 243,626 GFF2186 GFF2187 - ATPase associated with various cellular activities, AAA_5, at 243,631 to 244,485 GFF2187 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1at 240.589 kb on + strand, within GFF2183at 240.589 kb on + strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.590 kb on - strand, within GFF2183at 240.593 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.644 kb on - strand, within GFF2183at 240.733 kb on + strand, within GFF2183at 240.733 kb on + strand, within GFF2183at 240.734 kb on - strand, within GFF2183at 240.751 kb on + strand, within GFF2183at 240.751 kb on + strand, within GFF2183at 240.751 kb on + strand, within GFF2183at 240.752 kb on - strand, within GFF2183at 240.752 kb on - strand, within GFF2183at 240.976 kb on + strand, within GFF2183at 240.977 kb on - strand, within GFF2183at 241.100 kb on - strand, within GFF2183at 241.158 kb on + strand, within GFF2183at 241.222 kb on + strand, within GFF2183at 241.543 kb on + strandat 241.544 kb on - strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.547 kb on + strandat 241.548 kb on - strandat 241.548 kb on - strandat 241.548 kb on - strandat 241.571 kb on - strandat 241.598 kb on + strandat 241.598 kb on + strandat 241.598 kb on + strandat 241.598 kb on + strandat 241.599 kb on - strandat 241.599 kb on - strandat 241.599 kb on - strandat 241.599 kb on - strandat 241.745 kb on + strand, within GFF2184at 241.746 kb on - strand, within GFF2184at 241.779 kb on - strand, within GFF2184at 241.817 kb on + strand, within GFF2184at 241.818 kb on - strand, within GFF2184at 241.818 kb on - strand, within GFF2184at 241.829 kb on + strand, within GFF2184at 241.829 kb on + strand, within GFF2184at 241.830 kb on - strand, within GFF2184at 241.830 kb on - strand, within GFF2184at 241.901 kb on + strand, within GFF2184at 241.901 kb on + strand, within GFF2184at 241.901 kb on + strand, within GFF2184at 241.902 kb on - strand, within GFF2184at 241.902 kb on - strand, within GFF2184at 241.919 kb on + strand, within GFF2184at 241.919 kb on + strand, within GFF2184at 241.920 kb on - strand, within GFF2184at 241.920 kb on - strand, within GFF2184at 242.204 kb on + strand, within GFF2184at 242.204 kb on + strand, within GFF2184at 242.213 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.272 kb on + strand, within GFF2184at 242.273 kb on - strand, within GFF2184at 242.273 kb on - strand, within GFF2184at 242.288 kb on + strand, within GFF2184at 242.522 kb on + strand, within GFF2184at 242.552 kb on + strand, within GFF2184at 242.552 kb on + strand, within GFF2184at 242.553 kb on - strand, within GFF2184at 242.553 kb on - strand, within GFF2184at 242.553 kb on - strand, within GFF2184at 242.591 kb on + strand, within GFF2184at 242.591 kb on + strand, within GFF2184at 242.591 kb on + strand, within GFF2184at 242.592 kb on - strand, within GFF2184at 242.592 kb on - strand, within GFF2184at 242.592 kb on - strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.594 kb on + strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.595 kb on - strand, within GFF2184at 242.672 kb on + strandat 242.672 kb on + strandat 242.672 kb on + strandat 242.673 kb on - strandat 242.673 kb on - strandat 242.673 kb on - strandat 242.673 kb on - strandat 242.714 kb on + strandat 242.715 kb on - strandat 242.785 kb on - strandat 242.785 kb on - strandat 242.832 kb on + strand, within GFF2185at 242.832 kb on + strand, within GFF2185at 242.833 kb on - strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.051 kb on + strand, within GFF2185at 243.052 kb on - strand, within GFF2185at 243.190 kb on - strand, within GFF2185at 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.373 kb on + strandat 243.374 kb on - strandat 243.400 kb on + strandat 243.413 kb on - strand, within GFF2186at 243.413 kb on - strand, within GFF2186at 243.413 kb on - strand, within GFF2186at 243.490 kb on + strand, within GFF2186at 243.491 kb on - strand, within GFF2186

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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240,589 + GFF2183 0.54 -1.3
240,589 + GFF2183 0.54 -1.0
240,590 - GFF2183 0.54 -0.5
240,590 - GFF2183 0.54 -1.1
240,590 - GFF2183 0.54 -0.5
240,590 - GFF2183 0.54 -1.3
240,590 - GFF2183 0.54 +0.1
240,593 - GFF2183 0.54 -0.8
240,644 - GFF2183 0.57 -0.1
240,644 - GFF2183 0.57 -1.1
240,644 - GFF2183 0.57 -0.5
240,644 - GFF2183 0.57 -0.6
240,733 + GFF2183 0.62 -0.5
240,733 + GFF2183 0.62 -1.3
240,734 - GFF2183 0.62 -1.3
240,751 + GFF2183 0.62 -0.7
240,751 + GFF2183 0.62 -0.2
240,751 + GFF2183 0.62 -0.7
240,752 - GFF2183 0.62 -0.9
240,752 - GFF2183 0.62 -0.2
240,976 + GFF2183 0.74 -2.5
240,977 - GFF2183 0.74 -0.7
241,100 - GFF2183 0.80 -0.4
241,158 + GFF2183 0.83 -1.1
241,222 + GFF2183 0.87 -0.3
241,543 + -1.0
241,544 - -1.3
241,547 + -1.5
241,547 + -0.4
241,547 + +0.2
241,547 + -0.5
241,547 + -0.5
241,548 - -3.4
241,548 - -1.6
241,548 - +0.3
241,571 - -0.4
241,598 + -0.7
241,598 + -0.3
241,598 + -0.5
241,598 + -1.0
241,599 - -0.1
241,599 - -0.1
241,599 - -0.3
241,599 - -0.8
241,745 + GFF2184 0.17 +0.4
241,746 - GFF2184 0.17 -0.1
241,779 - GFF2184 0.20 -0.8
241,817 + GFF2184 0.23 -1.0
241,818 - GFF2184 0.23 +0.6
241,818 - GFF2184 0.23 -2.5
241,829 + GFF2184 0.24 -0.7
241,829 + GFF2184 0.24 -1.7
241,830 - GFF2184 0.24 -1.5
241,830 - GFF2184 0.24 +1.2
241,901 + GFF2184 0.30 +0.4
241,901 + GFF2184 0.30 -1.7
241,901 + GFF2184 0.30 +0.9
241,902 - GFF2184 0.30 +0.0
241,902 - GFF2184 0.30 -0.2
241,919 + GFF2184 0.31 -0.2
241,919 + GFF2184 0.31 +0.0
241,920 - GFF2184 0.31 +0.5
241,920 - GFF2184 0.31 -0.1
242,204 + GFF2184 0.55 -0.2
242,204 + GFF2184 0.55 -0.7
242,213 + GFF2184 0.56 -2.5
242,272 + GFF2184 0.61 -0.5
242,272 + GFF2184 0.61 -0.5
242,272 + GFF2184 0.61 -0.5
242,272 + GFF2184 0.61 -0.4
242,272 + GFF2184 0.61 -0.2
242,273 - GFF2184 0.61 -0.8
242,273 - GFF2184 0.61 -0.3
242,288 + GFF2184 0.62 -0.6
242,522 + GFF2184 0.82 +0.0
242,552 + GFF2184 0.85 +0.0
242,552 + GFF2184 0.85 -0.1
242,553 - GFF2184 0.85 +1.2
242,553 - GFF2184 0.85 -0.3
242,553 - GFF2184 0.85 -0.3
242,591 + GFF2184 0.88 -0.5
242,591 + GFF2184 0.88 -0.9
242,591 + GFF2184 0.88 -1.0
242,592 - GFF2184 0.88 -0.7
242,592 - GFF2184 0.88 -1.5
242,592 - GFF2184 0.88 -0.5
242,594 + GFF2184 0.88 -0.7
242,594 + GFF2184 0.88 -0.3
242,594 + GFF2184 0.88 +0.7
242,594 + GFF2184 0.88 -0.3
242,594 + GFF2184 0.88 -0.5
242,595 - GFF2184 0.88 -1.6
242,595 - GFF2184 0.88 -2.1
242,595 - GFF2184 0.88 -0.8
242,595 - GFF2184 0.88 -0.7
242,595 - GFF2184 0.88 -0.5
242,672 + -1.4
242,672 + -0.2
242,672 + -1.0
242,673 - +0.7
242,673 - -1.5
242,673 - -0.1
242,673 - -0.3
242,714 + -1.1
242,715 - -2.6
242,785 - -0.1
242,785 - -0.1
242,832 + GFF2185 0.12 +0.8
242,832 + GFF2185 0.12 +1.0
242,833 - GFF2185 0.13 -0.3
243,051 + GFF2185 0.50 -0.4
243,051 + GFF2185 0.50 -0.2
243,051 + GFF2185 0.50 +0.2
243,051 + GFF2185 0.50 -0.4
243,052 - GFF2185 0.50 -0.8
243,190 - GFF2185 0.73 -0.7
243,373 + +0.4
243,373 + -0.4
243,373 + -0.5
243,373 + +0.2
243,373 + -0.1
243,373 + +1.2
243,373 + -0.1
243,373 + +1.0
243,373 + +0.8
243,373 + +0.3
243,373 + -0.6
243,374 - +0.3
243,400 + -0.4
243,413 - GFF2186 0.13 +0.4
243,413 - GFF2186 0.13 -0.6
243,413 - GFF2186 0.13 +0.3
243,490 + GFF2186 0.44 +0.5
243,491 - GFF2186 0.45 -1.7

Or see this region's nucleotide sequence